HL_8VTX_065

3D structure

PDB id

8VTX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with macrolone MCX-128, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

8VTX|1|1A|G|2751, 8VTX|1|1A|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VTX_065 not in the Motif Atlas

Homologous match to HL_8VTW_065

Geometric discrepancy: 0.0403

The information below is about HL_8VTW_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

8VTX|1|1A|C|2745
8VTX|1|1A|U|2746
8VTX|1|1A|G|2747
8VTX|1|1A|A|2748
8VTX|1|1A|A|2749
8VTX|1|1A|A|2750
8VTX|1|1A|G|2751
8VTX|1|1A|C|2752
8VTX|1|1A|A|2753
8VTX|1|1A|U|2754
8VTX|1|1A|C|2755
8VTX|1|1A|U|2756
8VTX|1|1A|A|2757
8VTX|1|1A|A|2758
8VTX|1|1A|G|2759

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L36

Chain 1H

50S ribosomal protein L6

Chain 1N

50S ribosomal protein L13