HL_8VTX_226
3D structure
- PDB id
- 8VTX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with macrolone MCX-128, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.4 Å
Loop
- Sequence
- A(PSU)UGAA(MIA)A(PSU)
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU, MIA
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8VTX_226 not in the Motif Atlas
- Homologous match to HL_4YCO_002
- Geometric discrepancy: 0.1108
- The information below is about HL_4YCO_002
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_81376.3
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 43
Unit IDs
8VTX|1|1w|A|31
8VTX|1|1w|PSU|32
8VTX|1|1w|U|33
8VTX|1|1w|G|34
8VTX|1|1w|A|35
8VTX|1|1w|A|36
8VTX|1|1w|MIA|37
8VTX|1|1w|A|38
8VTX|1|1w|PSU|39
Current chains
- Chain 1w
- Aminoacylated Phe-tRNAphe
Nearby chains
- Chain 1A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 1a
- Small subunit ribosomal RNA; SSU rRNA
- Chain 1l
- 30S ribosomal protein S12
- Chain 1m
- 30S ribosomal protein S13
- Chain 1v
- MF-mRNA
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