HL_8VTY_013

3D structure

PDB id

8VTY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with ciprofloxacin and protein Y at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGACCACC

Length

8 nucleotides

Bulged bases

8VTY|1|1A|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VTY_013 not in the Motif Atlas

Homologous match to HL_8VTW_013

Geometric discrepancy: 0.0324

The information below is about HL_8VTW_013

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8VTY|1|1A|G|410
8VTY|1|1A|G|411
8VTY|1|1A|A|412
8VTY|1|1A|C|413
8VTY|1|1A|C|414
8VTY|1|1A|A|415
8VTY|1|1A|C|416
8VTY|1|1A|C|417

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1P

50S ribosomal protein L15