Motif HL_30680.1 Version HL_30680.1 of this group appears in releases 3.89 to 3.90
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5U30_002 | 5U30 | 0.4108 | 0 | Pseudoknot geometry | B | sgRNA | U | 43 | U | 44 | U | 45 | C | 46 | C | 47 | A | 48 | G | 49 | cWW |
| 2 | HL_6VMY_003 | 6VMY | 0.2661 | 0 | Pseudoknot geometry | A | Cobalamin riboswitch | G | 268 | U | 269 | C | 270 | C | 271 | C | 272 | G | 273 | C | 274 | cWW |
| 3 | HL_4KQY_001 | 4KQY | 0.2039 | 0 | Pseudoknot geometry | A | SAM-I riboswitch | G | 23 | A | 24 | C | 25 | U | 26 | G | 27 | G | 28 | C | 29 | cWW |
| 4 | HL_4AOB_001 | 4AOB | 0.1322 | 0 | Pseudoknot geometry | A | SAM-I riboswitch | G | 23 | A | 24 | C | 25 | U | 26 | G | 27 | G | 28 | C | 29 | cWW |
| 5 | HL_5FJC_001 | 5FJC | 0.0000 | 0 | Pseudoknot geometry | A | SAM-I riboswitch | G | 23 | A | 24 | C | 25 | U | 26 | G | 27 | G | 28 | C | 29 | cWW |
| 6 | HL_6MWN_004 | 6MWN | 0.1902 | 0 | Pseudoknot geometry | B | IRES | G | 650 | C | 651 | U | 652 | G | 653 | G | 654 | A | 655 | C | 656 | cWW |
| 7 | HL_3V7E_001 | 3V7E | 0.2223 | 0 | Pseudoknot geometry | C | SAM-I riboswitch | G | 23 | A | 24 | C | 25 | U | 26 | G | 27 | G | 28 | C | 29 | cWW |
| 8 | HL_3IVK_004 | 3IVK | 0.5279 | 1 | Pseudoknot geometry | M | class I ligase product | G | 75 | G | 77 | G | 78 | C | 79 | A | 80 | G | 81 | C | 82 | cWW |
| 9 | HL_3HHN_009 | 3HHN | 0.5143 | 1 | Pseudoknot geometry | E | Class I ligase ribozyme, self-ligation product | G | 75 | G | 77 | G | 78 | C | 79 | A | 80 | G | 81 | C | 82 | cWW |
| 10 | HL_8VTW_013 | 8VTW | 0.5448 | 1 | Pseudoknot geometry | 1A | LSU rRNA | G | 410 | A | 412 | C | 413 | C | 414 | A | 415 | C | 416 | C | 417 | cWW |
| 11 | HL_5J7L_146 | 5J7L | 0.5667 | 1 | Pseudoknot geometry | DA | LSU rRNA | G | 410 | A | 412 | C | 413 | C | 414 | A | 415 | U | 416 | C | 417 | cWW |
| 12 | HL_4WF9_014 | 4WF9 | 0.5229 | 1 | Pseudoknot geometry | X | LSU rRNA | G | 456 | A | 458 | C | 459 | C | 460 | A | 461 | U | 462 | C | 463 | cWW |
| 13 | HL_7A0S_014 | 7A0S | 0.6017 | 1 | Pseudoknot geometry | X | LSU rRNA | G | 423 | A | 425 | C | 426 | C | 427 | A | 428 | C | 429 | C | 430 | cWW |
| 14 | HL_1WZ2_006 | 1WZ2 | 0.7758 | 2 | Pseudoknot geometry | D | tRNA | A | 934 | C | 937 | A | 938 | A | 939 | G | 940 | A | 941 | U | 942 | cWW |
| 15 | HL_4OQU_002 | 4OQU | 0.7542 | 2 | Pseudoknot geometry | A | SAM-I/IV riboswitch | G | 32 | C | 34 | G | 35 | G | 36 | A | 37 | C | 38 | C | 40 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GACUGGC | 4 |
| GUGGCAGC | 2 |
| GGACCACC | 2 |
| GGACCAUC | 2 |
| UUUCCAG | 1 |
| GUCCCGC | 1 |
| GCUGGAC | 1 |
| ACUCAAGAU | 1 |
| GACGGACAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| ACUGG | 4 |
| UGGCAG | 2 |
| GACCAC | 2 |
| GACCAU | 2 |
| UUCCA | 1 |
| UCCCG | 1 |
| CUGGA | 1 |
| CUCAAGA | 1 |
| ACGGACA | 1 |
- Annotations
-
- Pseudoknot geometry (15)
- Basepair signature
- cWW-F-F-F-F-F
- Heat map statistics
- Min 0.09 | Avg 0.47 | Max 0.91
Coloring options: