HL_8VTY_022

3D structure

PDB id

8VTY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with ciprofloxacin and protein Y at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGAUGCAAAC

Length

10 nucleotides

Bulged bases

8VTY|1|1A|U|747, 8VTY|1|1A|A|751

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VTY_022 not in the Motif Atlas

Homologous match to HL_8VTW_022

Geometric discrepancy: 0.042

The information below is about HL_8VTW_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

8VTY|1|1A|G|744
8VTY|1|1A|G|745
8VTY|1|1A|A|746
8VTY|1|1A|U|747
8VTY|1|1A|G|748
8VTY|1|1A|C|749
8VTY|1|1A|A|750
8VTY|1|1A|A|751
8VTY|1|1A|A|752
8VTY|1|1A|C|753

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 15

50S ribosomal protein L32

Chain 17

50S ribosomal protein L34

Chain 1E

50S ribosomal protein L3

Chain 1W

50S ribosomal protein L22