HL_8VTY_114

3D structure

PDB id

8VTY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with ciprofloxacin and protein Y at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GUGAAAGCC

Length

9 nucleotides

Bulged bases

8VTY|1|2A|G|329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VTY_114 not in the Motif Atlas

Homologous match to HL_8VTW_011

Geometric discrepancy: 0.0894

The information below is about HL_8VTW_011

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.12

Basepair signature

cWW-cWW-F-tWH

Number of instances in this motif group

16

Unit IDs

8VTY|1|2A|G|327
8VTY|1|2A|U|328
8VTY|1|2A|G|329
8VTY|1|2A|A|330
8VTY|1|2A|A|331
8VTY|1|2A|A|332
8VTY|1|2A|G|333
8VTY|1|2A|C|334
8VTY|1|2A|C|335

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2F

50S ribosomal protein L4

Chain 2Y

50S ribosomal protein L24