HL_8VUP_009

3D structure

PDB id

8VUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified tRNAPro(GGG) in the e*/E conformation on a slippery CCC-C codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

8VUP|1|1|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VUP_009 not in the Motif Atlas

Geometric match to HL_7A0S_010

Geometric discrepancy: 0.2148

The information below is about HL_7A0S_010

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

8VUP|1|1|C|305
8VUP|1|1|U|306
8VUP|1|1|G|307
8VUP|1|1|G|308
8VUP|1|1|A|309
8VUP|1|1|A|310
8VUP|1|1|A|311
8VUP|1|1|G|312

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain U

Large ribosomal subunit protein uL24