HL_8VUP_010

3D structure

PDB id

8VUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified tRNAPro(GGG) in the e*/E conformation on a slippery CCC-C codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

8VUP|1|1|G|329, 8VUP|1|1|A|330, 8VUP|1|1|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VUP_010 not in the Motif Atlas

Geometric match to HL_5J7L_144

Geometric discrepancy: 0.1296

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

8VUP|1|1|G|327
8VUP|1|1|U|328
8VUP|1|1|G|329
8VUP|1|1|A|330
8VUP|1|1|C|331
8VUP|1|1|A|332
8VUP|1|1|G|333
8VUP|1|1|C|334
8VUP|1|1|C|335

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L4

Chain U

Large ribosomal subunit protein uL24