HL_8VUP_012

3D structure

PDB id

8VUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified tRNAPro(GGG) in the e*/E conformation on a slippery CCC-C codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

8VUP|1|1|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VUP_012 not in the Motif Atlas

Geometric match to HL_7A0S_014

Geometric discrepancy: 0.0855

The information below is about HL_7A0S_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8VUP|1|1|G|410
8VUP|1|1|G|411
8VUP|1|1|A|412
8VUP|1|1|C|413
8VUP|1|1|C|414
8VUP|1|1|A|415
8VUP|1|1|U|416
8VUP|1|1|C|417

Current chains

Chain 1

23S ribosomal RNA

Nearby chains