HL_8VUP_046

3D structure

PDB id

8VUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified tRNAPro(GGG) in the e*/E conformation on a slippery CCC-C codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VUP_046 not in the Motif Atlas

Geometric match to HL_5D5L_001

Geometric discrepancy: 0.2377

The information below is about HL_5D5L_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

8VUP|1|1|C|1868
8VUP|1|1|G|1869
8VUP|1|1|C|1870
8VUP|1|1|A|1871
8VUP|1|1|A|1872
8VUP|1|1|G|1873

Current chains

Chain 1

23S ribosomal RNA

Nearby chains