3D structure

PDB id
8VUP (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome with unmodified tRNAPro(GGG) in the e*/E conformation on a slippery CCC-C codon
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
CUAAAGAGUAACG
Length
13 nucleotides
Bulged bases
8VUP|1|1|A|2268, 8VUP|1|1|C|2275
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8VUP_053 not in the Motif Atlas
Geometric match to HL_5J7L_187
Geometric discrepancy: 0.1016
The information below is about HL_5J7L_187
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_91939.2
Basepair signature
cWW-tSH-tHH-tWW-F-F-F
Number of instances in this motif group
8

Unit IDs

8VUP|1|1|C|2264
8VUP|1|1|U|2265
8VUP|1|1|A|2266
8VUP|1|1|A|2267
8VUP|1|1|A|2268
8VUP|1|1|G|2269
8VUP|1|1|A|2270
8VUP|1|1|G|2271
8VUP|1|1|U|2272
8VUP|1|1|A|2273
8VUP|1|1|A|2274
8VUP|1|1|C|2275
8VUP|1|1|G|2276

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain M
50S ribosomal protein L16
Chain W
50S ribosomal protein L27

Coloring options:


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