3D structure

PDB id
8VUP (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome with unmodified tRNAPro(GGG) in the e*/E conformation on a slippery CCC-C codon
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
UGAAGUAG
Length
8 nucleotides
Bulged bases
8VUP|1|1|G|2529
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8VUP_060 not in the Motif Atlas
Geometric match to HL_5J7L_194
Geometric discrepancy: 0.1702
The information below is about HL_5J7L_194
Detailed Annotation
GNRA variation
Broad Annotation
GNRA variation
Motif group
HL_31585.4
Basepair signature
cWW-F-F-F-F-F
Number of instances in this motif group
20

Unit IDs

8VUP|1|1|U|2528
8VUP|1|1|G|2529
8VUP|1|1|A|2530
8VUP|1|1|A|2531
8VUP|1|1|G|2532
8VUP|1|1|U|2533
8VUP|1|1|A|2534
8VUP|1|1|G|2535

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain F
Large ribosomal subunit protein uL6
Chain f
50S ribosomal protein L36

Coloring options:


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