HL_8VUP_074

3D structure

PDB id

8VUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified tRNAPro(GGG) in the e*/E conformation on a slippery CCC-C codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

8VUP|1|2|G|266

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VUP_074 not in the Motif Atlas

Geometric match to HL_5J7L_006

Geometric discrepancy: 0.2801

The information below is about HL_5J7L_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8VUP|1|2|G|259
8VUP|1|2|G|260
8VUP|1|2|U|261
8VUP|1|2|A|262
8VUP|1|2|A|263
8VUP|1|2|C|264
8VUP|1|2|G|265
8VUP|1|2|G|266
8VUP|1|2|C|267

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain v

30S ribosomal protein S17

Chain y

30S ribosomal protein S20