HL_8VUP_089

3D structure

PDB id

8VUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified tRNAPro(GGG) in the e*/E conformation on a slippery CCC-C codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAUGCAACGC

Length

10 nucleotides

Bulged bases

8VUP|1|2|G|971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VUP_089 not in the Motif Atlas

Geometric match to HL_8B0X_019

Geometric discrepancy: 0.3505

The information below is about HL_8B0X_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_97521.1

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8VUP|1|2|G|963
8VUP|1|2|A|964
8VUP|1|2|U|965
8VUP|1|2|G|966
8VUP|1|2|C|967
8VUP|1|2|A|968
8VUP|1|2|A|969
8VUP|1|2|C|970
8VUP|1|2|G|971
8VUP|1|2|C|972

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 5

Transfer RNA; tRNA

Chain n

Small ribosomal subunit protein uS9

Chain o

30S ribosomal protein S10

Chain s

Small ribosomal subunit protein uS14