HL_8VV4_042
3D structure
- PDB id
- 8VV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) in the P/P conformation on a slippery CCC-C codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- UUUAUUAAAAA
- Length
- 11 nucleotides
- Bulged bases
- 8VV4|1|1|A|1780, 8VV4|1|1|U|1781, 8VV4|1|1|U|1782, 8VV4|1|1|A|1786
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8VV4_042 not in the Motif Atlas
- Geometric match to HL_4WF9_043
- Geometric discrepancy: 0.104
- The information below is about HL_4WF9_043
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_87681.1
- Basepair signature
- cWW-cWW-tWH-F-tWH-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
8VV4|1|1|U|1777
8VV4|1|1|U|1778
8VV4|1|1|U|1779
8VV4|1|1|A|1780
8VV4|1|1|U|1781
8VV4|1|1|U|1782
8VV4|1|1|A|1783
8VV4|1|1|A|1784
8VV4|1|1|A|1785
8VV4|1|1|A|1786
8VV4|1|1|A|1787
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain B
- 50S ribosomal protein L2
- Chain d
- 50S ribosomal protein L34
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