HL_8VV4_062

3D structure

PDB id

8VV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) in the P/P conformation on a slippery CCC-C codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

8VV4|1|1|G|2751, 8VV4|1|1|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VV4_062 not in the Motif Atlas

Geometric match to HL_5J7L_199

Geometric discrepancy: 0.0795

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

8VV4|1|1|C|2745
8VV4|1|1|U|2746
8VV4|1|1|G|2747
8VV4|1|1|A|2748
8VV4|1|1|A|2749
8VV4|1|1|A|2750
8VV4|1|1|G|2751
8VV4|1|1|C|2752
8VV4|1|1|A|2753
8VV4|1|1|U|2754
8VV4|1|1|C|2755
8VV4|1|1|U|2756
8VV4|1|1|A|2757
8VV4|1|1|A|2758
8VV4|1|1|G|2759

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L6

Chain J

50S ribosomal protein L13

Chain f

50S ribosomal protein L36