HL_8VVP_014

3D structure

PDB id

8VVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UCUGAUCG

Length

8 nucleotides

Bulged bases

8VVP|1|WA|C|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVP_014 not in the Motif Atlas

Geometric match to HL_3VJR_001

Geometric discrepancy: 0.3257

The information below is about HL_3VJR_001

Detailed Annotation

T-loop with 2 bulged bases not stacked

Broad Annotation

T-loop with 2 bulged bases not stacked

Motif group

HL_13999.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

8VVP|1|WA|U|204
8VVP|1|WA|C|205
8VVP|1|WA|U|206
8VVP|1|WA|G|207
8VVP|1|WA|A|208
8VVP|1|WA|U|209
8VVP|1|WA|C|210
8VVP|1|WA|G|211

Current chains

Chain WA

28S rRNA

Nearby chains

Chain DA

L32

Chain X

L26