HL_8VVP_022

3D structure

PDB id

8VVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUCC

Length

4 nucleotides

Bulged bases

8VVP|1|WA|U|1185, 8VVP|1|WA|C|1186

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVP_022 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.3391

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

8VVP|1|WA|G|1184
8VVP|1|WA|U|1185
8VVP|1|WA|C|1186
8VVP|1|WA|C|1189

Current chains

Chain WA

28S rRNA

Nearby chains

Chain D

uL18

Chain I

L10

Chain XA

5S ribosomal RNA; 5S rRNA