HL_8VVP_029
3D structure
- PDB id
- 8VVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Codon sampling state obtained from Anisomycin-treated mammalian ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GGAAAC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8VVP_029 not in the Motif Atlas
- Geometric match to HL_8CRE_215
- Geometric discrepancy: 0.0937
- The information below is about HL_8CRE_215
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_34789.4
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 399
Unit IDs
8VVP|1|WA|G|1563
8VVP|1|WA|G|1564
8VVP|1|WA|A|1565
8VVP|1|WA|A|1566
8VVP|1|WA|A|1567
8VVP|1|WA|C|1568
Current chains
- Chain WA
- 28S rRNA
Nearby chains
- Chain LB
- S11
- Chain NB
- uS15
- Chain OA
- eL43
- Chain ZA
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: