HL_8VVP_045

3D structure

PDB id

8VVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUUCAGAUCC

Length

10 nucleotides

Bulged bases

8VVP|1|WA|U|2532, 8VVP|1|WA|C|2533

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVP_045 not in the Motif Atlas

Geometric match to HL_8CRE_034

Geometric discrepancy: 0.1115

The information below is about HL_8CRE_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8VVP|1|WA|G|2525
8VVP|1|WA|U|2526
8VVP|1|WA|U|2527
8VVP|1|WA|C|2528
8VVP|1|WA|A|2529
8VVP|1|WA|G|2530
8VVP|1|WA|A|2531
8VVP|1|WA|U|2532
8VVP|1|WA|C|2533
8VVP|1|WA|C|2534

Current chains

Chain WA

28S rRNA

Nearby chains

Chain FA

L34

Chain Q

eL19

Chain W

uL23