HL_8VVP_054

3D structure

PDB id

8VVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

8VVP|1|WA|U|2876

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVP_054 not in the Motif Atlas

Geometric match to HL_8P9A_154

Geometric discrepancy: 0.0695

The information below is about HL_8P9A_154

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

62

Unit IDs

8VVP|1|WA|C|2874
8VVP|1|WA|U|2875
8VVP|1|WA|U|2876
8VVP|1|WA|C|2877
8VVP|1|WA|G|2878
8VVP|1|WA|G|2879

Current chains

Chain WA

28S rRNA

Nearby chains

Chain MA

eL41

Chain OA

eL43

Chain ZA

Small subunit ribosomal RNA; SSU rRNA