HL_8VVP_057

3D structure

PDB id

8VVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUUAAUUAAAA

Length

11 nucleotides

Bulged bases

8VVP|1|WA|A|3644, 8VVP|1|WA|A|3645, 8VVP|1|WA|U|3646, 8VVP|1|WA|A|3650

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVP_057 not in the Motif Atlas

Geometric match to HL_4WF9_043

Geometric discrepancy: 0.1351

The information below is about HL_4WF9_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87681.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8VVP|1|WA|U|3641
8VVP|1|WA|U|3642
8VVP|1|WA|U|3643
8VVP|1|WA|A|3644
8VVP|1|WA|A|3645
8VVP|1|WA|U|3646
8VVP|1|WA|U|3647
8VVP|1|WA|A|3648
8VVP|1|WA|A|3649
8VVP|1|WA|A|3650
8VVP|1|WA|A|3651

Current chains

Chain WA

28S rRNA

Nearby chains

Chain A

uL3

Chain IA

L37