HL_8VVP_067
3D structure
- PDB id
- 8VVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Codon sampling state obtained from Anisomycin-treated mammalian ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UCAAACGGUAACG
- Length
- 13 nucleotides
- Bulged bases
- 8VVP|1|WA|A|4216, 8VVP|1|WA|C|4223
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8VVP_067 not in the Motif Atlas
- Geometric match to HL_8CRE_054
- Geometric discrepancy: 0.1213
- The information below is about HL_8CRE_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_91939.2
- Basepair signature
- cWW-tSH-tHH-tWW-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
8VVP|1|WA|U|4212
8VVP|1|WA|C|4213
8VVP|1|WA|A|4214
8VVP|1|WA|A|4215
8VVP|1|WA|A|4216
8VVP|1|WA|C|4217
8VVP|1|WA|G|4218
8VVP|1|WA|G|4219
8VVP|1|WA|U|4220
8VVP|1|WA|A|4221
8VVP|1|WA|A|4222
8VVP|1|WA|C|4223
8VVP|1|WA|G|4224
Current chains
- Chain WA
- 28S rRNA
Nearby chains
- Chain AA
- L29
- Chain I
- L10
- Chain S
- eL21
Coloring options: