HL_8VVP_074

3D structure

PDB id

8VVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

8VVP|1|WA|G|4477

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVP_074 not in the Motif Atlas

Geometric match to HL_8P9A_173

Geometric discrepancy: 0.1475

The information below is about HL_8P9A_173

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_46665.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

8VVP|1|WA|A|4476
8VVP|1|WA|G|4477
8VVP|1|WA|C|4478
8VVP|1|WA|A|4479
8VVP|1|WA|G|4480
8VVP|1|WA|A|4481
8VVP|1|WA|A|4482
8VVP|1|WA|U|4483

Current chains

Chain WA

28S rRNA

Nearby chains

Chain H

L9

Chain LA

eL40