HL_8VVP_114

3D structure

PDB id

8VVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

8VVP|1|ZA|U|1300, 8VVP|1|ZA|G|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVP_114 not in the Motif Atlas

Geometric match to HL_4V9F_043

Geometric discrepancy: 0.2717

The information below is about HL_4V9F_043

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.3

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8VVP|1|ZA|A|1295
8VVP|1|ZA|U|1296
8VVP|1|ZA|U|1297
8VVP|1|ZA|G|1298
8VVP|1|ZA|A|1299
8VVP|1|ZA|U|1300
8VVP|1|ZA|A|1301
8VVP|1|ZA|G|1302
8VVP|1|ZA|C|1303
8VVP|1|ZA|U|1304

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain DC

uS14

Chain FC

S27A

Chain PB

S15