HL_8VVP_118

3D structure

PDB id

8VVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGUUCAG

Length

7 nucleotides

Bulged bases

8VVP|1|ZA|U|1462, 8VVP|1|ZA|U|1463

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVP_118 not in the Motif Atlas

Geometric match to HL_5J7L_179

Geometric discrepancy: 0.2818

The information below is about HL_5J7L_179

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_04783.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

8VVP|1|ZA|C|1460
8VVP|1|ZA|G|1461
8VVP|1|ZA|U|1462
8VVP|1|ZA|U|1463
8VVP|1|ZA|C|1464
8VVP|1|ZA|A|1465
8VVP|1|ZA|G|1466

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain GC

RACK1

Chain RB

eS17