HL_8VVP_120
3D structure
- PDB id
- 8VVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Codon sampling state obtained from Anisomycin-treated mammalian ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AUUGCAAUUAUU
- Length
- 12 nucleotides
- Bulged bases
- 8VVP|1|ZA|U|1621, 8VVP|1|ZA|U|1622, 8VVP|1|ZA|A|1623
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8VVP_120 not in the Motif Atlas
- Geometric match to HL_8CRE_223
- Geometric discrepancy: 0.2078
- The information below is about HL_8CRE_223
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50951.1
- Basepair signature
- cWW-F-F-tWH-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8VVP|1|ZA|A|1614
8VVP|1|ZA|U|1615
8VVP|1|ZA|U|1616
8VVP|1|ZA|G|1617
8VVP|1|ZA|C|1618
8VVP|1|ZA|A|1619
8VVP|1|ZA|A|1620
8VVP|1|ZA|U|1621
8VVP|1|ZA|U|1622
8VVP|1|ZA|A|1623
8VVP|1|ZA|U|1624
8VVP|1|ZA|U|1625
Current chains
- Chain ZA
- 18S rRNA
Nearby chains
- Chain DC
- uS14
- Chain PB
- S15
- Chain SB
- S18
- Chain TB
- S19
Coloring options: