HL_8VVQ_011

3D structure

PDB id

8VVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UAACCA

Length

6 nucleotides

Bulged bases

8VVQ|1|WA|C|72

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVQ_011 not in the Motif Atlas

Geometric match to HL_8CRE_002

Geometric discrepancy: 0.1028

The information below is about HL_8CRE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

8VVQ|1|WA|U|68
8VVQ|1|WA|A|69
8VVQ|1|WA|A|70
8VVQ|1|WA|C|71
8VVQ|1|WA|C|72
8VVQ|1|WA|A|73

Current chains

Chain WA

28S rRNA

Nearby chains

Chain HA

L36

Chain K

eL13

Chain M

L15

Chain Z

L27A