RNA 3D Hub //

8VVQ Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_8VVQ_0011/SA/13:22tRNA D-loop
geometric
HL_3EPH_001
HL_45175.1
HL_8VVQ_0021/SA/31:39tRNA anticodon loop
geometric
HL_5E81_212
NA
HL_8VVQ_0031/SA/53:61T-loop with 2 stacked bulged bases
geometric
HL_6UFH_008
HL_33597.3
HL_8VVQ_0041/TA/13:22tRNA D-loop
geometric
HL_7UQ6_001
HL_20490.1
HL_8VVQ_0081/UA/30:40No text annotation
HL_8VVQ_0091/UA/53:61T-loop with 2 stacked bulged bases
geometric
HL_6NWY_035
NA
HL_8VVQ_0101/WA/37:44No text annotation
geometric
HL_8P9A_113
HL_48677.1
HL_8VVQ_0111/WA/68:73No text annotation
geometric
HL_8CRE_002
NA
HL_8VVQ_0121/WA/89:95No text annotation
geometric
HL_8CRE_003
NA
HL_8VVQ_0131/WA/129:139No text annotation
HL_8VVQ_0141/WA/204:211T-loop with 2 bulged bases not stacked
geometric
HL_3VJR_001
HL_13999.3
HL_8VVQ_0151/WA/222:226No text annotation
geometric
HL_5J7L_143
NA
HL_8VVQ_0161/WA/230:238No text annotation
HL_8VVQ_0171/WA/289:298T-loop related
geometric
HL_8P9A_120
HL_63894.2
HL_8VVQ_0181/WA/314:323No text annotation
geometric
HL_8CRE_009
NA
HL_8VVQ_0191/WA/368:373GNRA
geometric
HL_4V9F_015
HL_34789.4
HL_8VVQ_0201/WA/393:398GNRA
geometric
HL_5J7L_152
NA
HL_8VVQ_0231/WA/967:975No text annotation
HL_8VVQ_0241/WA/1184:1189No text annotation
geometric
HL_2Y8W_001
HL_40612.1
HL_8VVQ_0261/WA/1319:1328T-loop with 2 stacked bulged bases
geometric
HL_8CRE_013
NA
HL_8VVQ_0271/WA/1366:1375No text annotation
HL_8VVQ_0281/WA/1391:1396GNRA
geometric
HL_8CRE_015
NA
HL_8VVQ_0291/WA/1438:1450No text annotation
HL_8VVQ_0301/WA/1481:1488No text annotation
HL_8VVQ_0311/WA/1563:1568GNRA
geometric
HL_8CRE_215
HL_34789.4
HL_8VVQ_0321/WA/1595:1604No text annotation
geometric
HL_8CRE_019
NA
HL_8VVQ_0331/WA/1629:1637No text annotation
geometric
HL_8P9A_133
HL_92598.1
HL_8VVQ_0341/WA/1677:1682No text annotation
HL_8VVQ_0361/WA/1818:1825T-loop related
geometric
HL_5J7L_024
NA
HL_8VVQ_0371/WA/1866:1872GNRA
geometric
HL_8CRE_024
NA
HL_8VVQ_0381/WA/1888:1895No text annotation
geometric
HL_8P9A_138
HL_47171.1
HL_8VVQ_0391/WA/1980:1990No text annotation
geometric
HL_5D8H_001
HL_20174.1
HL_8VVQ_0401/WA/2008:2015GNRA wlth tandem sheared
geometric
HL_6PRV_002
HL_98423.3
HL_8VVQ_0411/WA/2089:2272No text annotation
HL_8VVQ_0421/WA/2319:2324GNRA
geometric
HL_8CRE_029
NA
HL_8VVQ_0431/WA/2378:2386T-loop with 2 stacked bulged bases
geometric
HL_8CRE_030
NA
HL_8VVQ_0441/WA/2422:2428Pseudoknot geometry with 3' bulge
geometric
HL_9DFE_036
HL_49081.1
HL_8VVQ_0451/WA/2460:2465GNRA variation
geometric
HL_8CRE_032
NA
HL_8VVQ_0471/WA/2525:2534No text annotation
geometric
HL_8P9A_146
HL_77449.1
HL_8VVQ_0491/WA/2580:2585GNRA
geometric
HL_8CRE_035
NA
HL_8VVQ_0501/WA/2626:2634Pseudoknot geometry
geometric
HL_8CRE_036
NA
HL_8VVQ_0511/WA/2666:2672Other HL
geometric
HL_4V9F_039
HL_67772.1
HL_8VVQ_0521/WA/2707:2712No text annotation
HL_8VVQ_0531/WA/2740:2744No text annotation
geometric
HL_6LTU_001
HL_90436.3
HL_8VVQ_0541/WA/2794:2801No text annotation
geometric
HL_8P9A_152
HL_28592.2
HL_8VVQ_0551/WA/2812:2818GNRA
geometric
HL_8P9A_153
HL_34789.4
HL_8VVQ_0561/WA/2874:2879UNCG
geometric
HL_8CRE_042
NA
HL_8VVQ_0571/WA/2903:3600No text annotation
HL_8VVQ_0581/WA/3616:3620No text annotation
HL_8VVQ_0591/WA/3641:3651No text annotation
geometric
HL_4WF9_043
HL_87681.1
HL_8VVQ_0601/WA/3670:3676GNRA
geometric
HL_8P9A_125
HL_34789.4
HL_8VVQ_0611/WA/3726:3731GNRA
geometric
HL_8P9A_159
HL_34789.4
HL_8VVQ_0621/WA/3759:3769No text annotation
geometric
HL_8CRE_047
NA
HL_8VVQ_0631/WA/3798:3806No text annotation
geometric
HL_8CRE_048
NA
HL_8VVQ_0641/WA/3875:3884No text annotation
geometric
HL_8CRE_049
NA
HL_8VVQ_0651/WA/3947:4070No text annotation
HL_8VVQ_0681/WA/4195:4203No text annotation
geometric
HL_8P9A_165
HL_11974.2
HL_8VVQ_0691/WA/4212:4224No text annotation
geometric
HL_8CRE_054
NA
HL_8VVQ_0701/WA/4252:4260No text annotation
geometric
HL_8CRE_055
NA
HL_8VVQ_0711/WA/4272:4279Pseudoknot geometry
geometric
HL_8CRE_056
NA
HL_8VVQ_0721/WA/4303:4311No text annotation
geometric
HL_8CRE_057
NA
HL_8VVQ_0731/WA/4323:4328GNRA
geometric
HL_8CRE_058
NA
HL_8VVQ_0741/WA/4354:4364No text annotation
geometric
HL_7JRT_001
HL_36265.1
HL_8VVQ_0751/WA/4419:4427No text annotation
geometric
HL_8P9A_172
HL_52011.1
HL_8VVQ_0761/WA/4476:4483GNRA variation
geometric
HL_8P9A_173
HL_46665.2
HL_8VVQ_0771/WA/4499:4505No text annotation
geometric
HL_8P9A_174
HL_48677.1
HL_8VVQ_0781/WA/4542:4547GNRA
geometric
HL_8P9A_175
HL_34789.4
HL_8VVQ_0791/WA/4605:4610GNRA
geometric
HL_8CRE_064
NA
HL_8VVQ_0801/WA/4648:4653Ribsomal LSU H95
geometric
HL_5J7L_198
NA
HL_8VVQ_0811/WA/4690:4704No text annotation
geometric
HL_8CRE_066
NA
HL_8VVQ_0821/WA/4778:4861No text annotation
HL_8VVQ_0831/WA/4908:4917No text annotation
HL_8VVQ_0841/WA/4977:4985No text annotation
geometric
HL_8CRE_069
NA
HL_8VVQ_0851/WA/5023:5030No text annotation
geometric
HL_4V9F_003
HL_75660.7
HL_8VVQ_0861/XA/32:45No text annotation
geometric
HL_8OI5_068
HL_01182.1
HL_8VVQ_0871/XA/36:41No text annotation
geometric
HL_8OI5_069
HL_59381.2
HL_8VVQ_0881/XA/86:91GNRA
geometric
HL_7U4A_003
HL_34789.4
HL_8VVQ_0891/YA/47:56No text annotation
geometric
HL_8CRE_074
NA
HL_8VVQ_0901/YA/68:90No text annotation
HL_8VVQ_0911/YA/107:112No text annotation
geometric
HL_8P9A_188
HL_13184.2
HL_8VVQ_0921/YA/121:129No text annotation
HL_8VVQ_0931/ZA/7:17No text annotation
geometric
HL_8CRE_191
HL_73535.1
HL_8VVQ_0941/ZA/69:80No text annotation
HL_8VVQ_0951/ZA/156:162GNRA related
geometric
HL_8CRE_193
HL_34789.4
HL_8VVQ_0971/ZA/288:295T-loop with 1 bulged base
geometric
HL_8CRE_196
HL_67772.1
HL_8VVQ_0981/ZA/323:327No text annotation
HL_8VVQ_0991/ZA/377:387No text annotation
HL_8VVQ_1001/ZA/416:421GNRA variation
geometric
HL_8CRE_199
HL_34789.4
HL_8VVQ_1011/ZA/441:452No text annotation
geometric
HL_8CRE_200
HL_86432.1
HL_8VVQ_1021/ZA/462:467UNCG
geometric
HL_5Y85_004
HL_61337.3
HL_8VVQ_1031/ZA/498:504No text annotation
geometric
HL_8CRE_202
HL_89167.2
HL_8VVQ_1051/ZA/569:581No text annotation
geometric
HL_8P9A_203
HL_68749.1
HL_8VVQ_1061/ZA/618:623No text annotation
geometric
HL_8CRE_205
HL_93535.2
HL_8VVQ_1071/ZA/820:828No text annotation
geometric
HL_8CRE_207
HL_11974.2
HL_8VVQ_1091/ZA/957:966No text annotation
geometric
HL_8P9A_209
HL_38491.2
HL_8VVQ_1101/ZA/994:999GNRA
geometric
HL_8CRE_211
HL_34789.4
HL_8VVQ_1111/ZA/1054:1064No text annotation
geometric
HL_5J7L_017
NA
HL_8VVQ_1121/ZA/1114:1119No text annotation
HL_8VVQ_1131/ZA/1141:1146GNRA
geometric
HL_8CRE_214
HL_34789.4
HL_8VVQ_1141/ZA/1178:1183GNRA
geometric
HL_8CRE_215
HL_34789.4
HL_8VVQ_1151/ZA/1245:1254No text annotation
geometric
HL_8CRE_216
HL_97521.1
HL_8VVQ_1161/ZA/1295:1304GNRA wlth extra near cWW
geometric
HL_8CRE_217
HL_98423.3
HL_8VVQ_1171/ZA/1353:1358GNRA
geometric
HL_4V9F_065
HL_34789.4
HL_8VVQ_1181/ZA/1366:1373T-loop related
geometric
HL_8CRE_219
HL_63894.2
HL_8VVQ_1191/ZA/1417:1422Mini UNCG
geometric
HL_5F9R_002
NA
HL_8VVQ_1201/ZA/1460:1466No text annotation
geometric
HL_1F1T_001
NA
HL_8VVQ_1211/ZA/1565:1570GNRA
geometric
HL_8CRE_222
HL_34789.4
HL_8VVQ_1221/ZA/1614:1625No text annotation
geometric
HL_8CRE_223
HL_50951.1
HL_8VVQ_1231/ZA/1658:1666No text annotation
HL_8VVQ_1241/ZA/1847:1852GNRA variation
geometric
HL_8CRE_225
HL_34789.4

Problematic loops

#loop idProblemSequence
HL_8VVQ_005GNRA wlth tandem sheared
HL_8VVQ_006T-loop with 2 stacked bulged bases
HL_8VVQ_007No text annotation
HL_8VVQ_021No text annotation
HL_8VVQ_022No text annotation
HL_8VVQ_025No text annotation
HL_8VVQ_035No text annotation
HL_8VVQ_046Mini UNCG
HL_8VVQ_048GNRA
HL_8VVQ_066No text annotation
HL_8VVQ_067No text annotation
HL_8VVQ_096No text annotation
HL_8VVQ_104No text annotation
HL_8VVQ_108No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_8VVQ_0011/SA/2:4,
1/SA/69:71		Isolated non-canonical cWW pair
geometric
IL_4E59_001
IL_01003.3
IL_8VVQ_0021/SA/11:13,
1/SA/22:24		Isolated non-canonical cWW pair
geometric
IL_8CRE_073
NA
IL_8VVQ_0031/UA/2:4,
1/UA/69:71		Isolated non-canonical cWW pair
geometric
IL_4YHW_002
IL_01003.3
IL_8VVQ_0041/WA/6:7,
1/YA/149:151		Single bulged C
geometric
IL_1DQF_001
NA
IL_8VVQ_0051/WA/12:14,
1/YA/143:144		Single bulged U
geometric
IL_8P9A_232
IL_97561.3
IL_8VVQ_0061/WA/16:18,
1/YA/139:141		Isolated non-canonical cWW pair
geometric
IL_1Y27_001
IL_01003.3
IL_8VVQ_0071/WA/26:27,
1/WA/55:57		Single stack bend
geometric
IL_8CRE_004
NA
IL_8VVQ_0081/WA/30:37,
1/WA/44:52		tSH-tHW-tHH-tHS
geometric
IL_8CRE_005
NA
IL_8VVQ_0091/WA/81:88,
1/WA/96:102		8x7 Sarcin-Ricin; G-bulge
geometric
IL_1JBR_001
IL_62167.3
IL_8VVQ_0101/WA/118:121,
1/WA/152:153		Stack outside cWW
geometric
IL_5J7L_268
NA
IL_8VVQ_0111/WA/118:122,
1/WA/147:153		No text annotation
IL_8VVQ_0121/WA/121:122,
1/WA/147:152		No text annotation
geometric
IL_4V9F_009
IL_10396.1
IL_8VVQ_0131/WA/125:126,
1/WA/142:144		Single bulged C
geometric
IL_1DQF_001
NA
IL_8VVQ_0141/WA/168:174,
1/WA/262:267		No text annotation
IL_8VVQ_0151/WA/179:181,
1/WA/256:257		Single stack bend
geometric
IL_8P9A_328
IL_15011.2
IL_8VVQ_0161/WA/182:189,
1/WA/252:255		No text annotation
IL_8VVQ_0171/WA/195:196,
1/WA/244:246		Single bulged C
geometric
IL_6XKO_001
IL_05642.2
IL_8VVQ_0181/WA/199:201,
1/WA/214:215		No text annotation
geometric
IL_8CRE_013
NA
IL_8VVQ_0191/WA/339:342,
1/YA/32:33		Minor groove platform
geometric
IL_9DFE_073
IL_24264.1
IL_8VVQ_0201/WA/348:350,
1/YA/25:26		Single bulged A
geometric
IL_8CRE_014
NA
IL_8VVQ_0211/WA/387:390,
1/WA/401:414		No text annotation
geometric
IL_8CRE_015
NA
IL_8VVQ_0221/WA/415:421,
1/YA/13:19		Triple sheared with non-canonical cWW
geometric
IL_5J7L_245
NA
IL_8VVQ_0231/WA/443:446,
1/WA/1302:1306		Tandem non-canonical cWW pairs
geometric
IL_8P9A_421
IL_15225.2
IL_8VVQ_0241/WA/448:450,
1/WA/1299:1300		No text annotation
IL_8VVQ_0251/WA/459:460,
1/WA/696:698		Single bulged C
geometric
IL_1S03_006
IL_05642.2
IL_8VVQ_0261/WA/462:464,
1/WA/692:694		Isolated non-canonical cWW pair
geometric
IL_8PFQ_001
IL_01003.3
IL_8VVQ_0271/WA/466:472,
1/WA/683:690		No text annotation
IL_8VVQ_0281/WA/481:483,
1/WA/673:674		Single bulged C
geometric
IL_5F5H_001
IL_05642.2
IL_8VVQ_0291/WA/483:486,
1/WA/672:673		No text annotation
IL_8VVQ_0301/WA/488:489,
1/WA/666:670		Multiple bulged bases
geometric
IL_1R3E_001
IL_05670.1
IL_8VVQ_0311/WA/492:494,
1/WA/662:663		Single bulged U
geometric
IL_8TQX_002
IL_97561.3
IL_8VVQ_0321/WA/498:500,
1/WA/657:658		Single bulged C
geometric
IL_3SN2_001
IL_05642.2
IL_8VVQ_0331/WA/509:511,
1/WA/650:651		Single bulged A
geometric
IL_6WPI_001
IL_14190.2
IL_8VVQ_0341/WA/710:711,
1/WA/1288:1290		Single bulged G
geometric
IL_4LFB_036
IL_28408.2
IL_8VVQ_0351/WA/724:725,
1/WA/947:950		Multiple bulged bases
geometric
IL_7Q80_003
IL_05670.1
IL_8VVQ_0361/WA/728:732,
1/WA/943:944		No text annotation
IL_8VVQ_0371/WA/733:736,
1/WA/932:942		No text annotation
IL_8VVQ_0381/WA/738:741,
1/WA/927:930		No text annotation
IL_8VVQ_0391/WA/745:754,
1/WA/913:923		No text annotation
IL_8VVQ_0401/WA/1083:1086,
1/WA/1225:1239		No text annotation
IL_8VVQ_0411/WA/1088:1090,
1/WA/1219:1223		Isolated near basepair
geometric
IL_7A0S_030
IL_42997.5
IL_8VVQ_0421/WA/1092:1093,
1/WA/1215:1217		Single bulged C
geometric
IL_1S03_006
IL_05642.2
IL_8VVQ_0431/WA/1102:1103,
1/WA/1204:1206		Single stack bend
geometric
IL_8CRE_012
NA
IL_8VVQ_0441/WA/1106:1174,
1/WA/1199:1201		No text annotation
IL_8VVQ_0451/WA/1179:1181,
1/WA/1192:1194		Isolated cWH basepair
geometric
IL_5J7L_011
NA
IL_8VVQ_0461/WA/1250:1253,
1/WA/1264:1267		Tandem non-canonical cWW pairs
geometric
IL_5EW4_001
IL_76776.1
IL_8VVQ_0471/WA/1359:1362,
1/WA/1381:1384		No text annotation
IL_8VVQ_0481/WA/1359:1363,
1/WA/1378:1384		No text annotation
IL_8VVQ_0491/WA/1362:1363,
1/WA/1378:1381		Single bulged A
geometric
IL_4V9F_090
IL_73464.1
IL_8VVQ_0501/WA/1427:1431,
1/WA/1457:1462		No text annotation
geometric
IL_3BBM_001
IL_47352.2
IL_8VVQ_0511/WA/1433:1436,
1/WA/1452:1455		Double sheared
geometric
IL_4LFB_060
IL_58355.2
IL_8VVQ_0521/WA/1469:1470,
1/WA/1498:1500		Single bulged A
geometric
IL_8P9A_252
IL_14190.2
IL_8VVQ_0531/WA/1476:1478,
1/WA/1491:1492		Single stack bend
geometric
IL_7A0S_005
IL_15011.2
IL_8VVQ_0541/WA/1522:1524,
1/WA/1657:1659		Isolated non-canonical cWW pair
geometric
IL_8P9A_255
IL_01003.3
IL_8VVQ_0551/WA/1524:1528,
1/WA/1650:1657		No text annotation
geometric
IL_8CRE_030
NA
IL_8VVQ_0561/WA/1552:1553,
1/WA/1578:1580		Single bulged G
geometric
IL_4V9F_026
IL_28408.2
IL_8VVQ_0571/WA/1553:1557,
1/WA/1574:1578		Triple sheared
geometric
IL_4V9F_027
IL_15190.2
IL_8VVQ_0581/WA/1588:1591,
1/WA/1607:1609		No text annotation
geometric
IL_8CRE_034
NA
IL_8VVQ_0591/WA/1592:1594,
1/WA/1605:1606		No text annotation
geometric
IL_8CRE_035
NA
IL_8VVQ_0601/WA/1626:1628,
1/WA/1638:1642		No text annotation
geometric
IL_8CRE_036
NA
IL_8VVQ_0611/WA/1673:1675,
1/WA/1684:1686		Isolated non-canonical cWW pair
geometric
IL_8CRE_037
NA
IL_8VVQ_0621/WA/1688:1690,
1/WA/1850:1853		No text annotation
IL_8VVQ_0631/WA/1696:1723,
1/WA/1843:1844		No text annotation
IL_8VVQ_0641/WA/1725:1727,
1/WA/1840:1841		No text annotation
geometric
IL_8CRE_040
NA
IL_8VVQ_0651/WA/1734:1739,
1/WA/1794:1799		No text annotation
IL_8VVQ_0661/WA/1739:1740,
1/WA/1792:1794		Minor groove platform
geometric
IL_8CRE_042
NA
IL_8VVQ_0671/WA/1741:1746,
1/WA/1788:1791		C-loop with bulged stacked A's
geometric
IL_8P9A_268
IL_16301.1
IL_8VVQ_0681/WA/1748:1751,
1/WA/1783:1786		Tandem non-canonical cWW pairs
geometric
IL_8P9A_269
IL_71194.2
IL_8VVQ_0691/WA/1751:1753,
1/WA/1781:1783		Isolated non-canonical cWW pair
geometric
IL_8P9A_270
IL_01003.3
IL_8VVQ_0701/WA/1755:1758,
1/WA/1778:1779		No text annotation
IL_8VVQ_0711/WA/1816:1818,
1/WA/1825:1826		No text annotation
geometric
IL_8CRE_048
NA
IL_8VVQ_0721/WA/1860:1862,
1/WA/1876:1878		Isolated non-canonical cWW pair
geometric
IL_8P9A_274
IL_01003.3
IL_8VVQ_0741/WA/1907:1911,
1/WA/2069:2073		UAA/GAN
geometric
IL_8P9A_276
IL_08938.1
IL_8VVQ_0751/WA/1913:1920,
1/WA/2066:2067		SSU/LSU pseudoknot
geometric
IL_9DFE_036
IL_11411.1
IL_8VVQ_0761/WA/1920:1922,
1/WA/2065:2066		Single bulged G
geometric
IL_8TSV_002
IL_28408.2
IL_8VVQ_0771/WA/1922:1924,
1/WA/2064:2065		No text annotation
IL_8VVQ_0781/WA/1928:1935,
1/WA/2055:2060		No text annotation
geometric
IL_8CRE_054
NA
IL_8VVQ_0791/WA/1935:1946,
1/WA/2040:2055		No text annotation
geometric
IL_8CRE_055
NA
IL_8VVQ_0801/WA/1948:1950,
1/WA/2037:2038		Single bulged U
geometric
IL_8P9A_281
IL_97561.3
IL_8VVQ_0811/WA/1959:1967,
1/WA/2024:2028		Kink-turn
geometric
IL_4V9F_042
IL_99692.3
IL_8VVQ_0821/WA/1975:1979,
1/WA/1991:1995		No text annotation
geometric
IL_8P9A_283
IL_16218.3
IL_8VVQ_0831/WA/2003:2007,
1/WA/2016:2018		No text annotation
geometric
IL_8P9A_284
IL_36931.2
IL_8VVQ_0841/WA/2085:2087,
1/WA/2274:2275		Single bulged U
geometric
IL_4LFB_046
IL_97561.3
IL_8VVQ_0851/WA/2292:2294,
1/WA/2344:2347		No text annotation
geometric
IL_8P9A_285
IL_42997.5
IL_8VVQ_0861/WA/2301:2303,
1/WA/2336:2337		Single bulged A
geometric
IL_3OXE_001
IL_14190.2
IL_8VVQ_0871/WA/2304:2311,
1/WA/2331:2335		Kink-turn
geometric
IL_7EAG_003
IL_90775.2
IL_8VVQ_0881/WA/2314:2316,
1/WA/2327:2328		Single bulged A
geometric
IL_7DLZ_001
NA
IL_8VVQ_0891/WA/2360:2366,
1/WA/3860:3865		7x6 Sarcin-Ricin; G-bulge
geometric
IL_8CRE_065
NA
IL_8VVQ_0901/WA/2417:2421,
1/WA/2429:2431		C-loop
geometric
IL_7A0S_047
IL_06671.1
IL_8VVQ_0911/WA/2448:2452,
1/WA/2511:2516		UAA/GAN
geometric
IL_8CRE_067
NA
IL_8VVQ_0921/WA/2479:2481,
1/WA/2501:2502		Minor groove platform
geometric
IL_8CRE_042
NA
IL_8VVQ_0931/WA/2481:2483,
1/WA/2500:2501		Single stack bend
geometric
IL_7MLX_001
IL_15011.2
IL_8VVQ_0941/WA/2483:2487,
1/WA/2495:2500		No text annotation
IL_8VVQ_0951/WA/2544:2549,
1/WA/2774:2776		No text annotation
IL_8VVQ_0961/WA/2551:2552,
1/WA/2770:2772		Single bulged U
geometric
IL_8TQX_001
IL_97561.3
IL_8VVQ_0971/WA/2591:2595,
1/WA/2754:2758		Triple sheared
geometric
IL_9DFE_075
IL_15190.2
IL_8VVQ_0981/WA/2615:2616,
1/WA/2726:2728		Single bulged A
geometric
IL_3B31_001
IL_14190.2
IL_8VVQ_0991/WA/2616:2617,
1/WA/2724:2726		Single stack bend
geometric
IL_8CRE_075
NA
IL_8VVQ_1001/WA/2648:2650,
1/WA/2687:2690		No text annotation
IL_8VVQ_1011/WA/2653:2655,
1/WA/2683:2684		No text annotation
geometric
IL_8ZA0_002
IL_28408.2
IL_8VVQ_1021/WA/2658:2664,
1/WA/2674:2680		No text annotation
geometric
IL_8P9A_301
IL_93476.1
IL_8VVQ_1031/WA/2706:2707,
1/WA/2712:2714		Single bulged G
geometric
IL_4LVW_002
IL_28408.2
IL_8VVQ_1041/WA/2834:2840,
1/WA/3852:3855		No text annotation
geometric
IL_8CRE_079
NA
IL_8VVQ_1051/WA/2846:2848,
1/WA/3844:3846		No text annotation
geometric
IL_8P9A_303
IL_10432.1
IL_8VVQ_1061/WA/2849:2852,
1/WA/3842:3843		Major groove platform; stack outside cWW
geometric
IL_8P9A_304
IL_74641.2
IL_8VVQ_1071/WA/2849:2857,
1/WA/3839:3843		No text annotation
geometric
IL_8P9A_305
IL_80252.1
IL_8VVQ_1081/WA/2852:2857,
1/WA/3839:3842		No text annotation
geometric
IL_8P9A_306
IL_28217.1
IL_8VVQ_1091/WA/2869:2874,
1/WA/2879:2885		No text annotation
geometric
IL_8CRE_084
NA
IL_8VVQ_1101/WA/2891:2893,
1/WA/3612:3614		Isolated non-canonical cWW pair
geometric
IL_6OL3_002
IL_01003.3
IL_8VVQ_1111/WA/2898:2899,
1/WA/3604:3607		No text annotation
geometric
IL_8CRE_086
NA
IL_8VVQ_1121/WA/3634:3635,
1/WA/3829:3831		Single bulged A
geometric
IL_4V9F_064
IL_14190.2
IL_8VVQ_1131/WA/3662:3667,
1/WA/3679:3686		No text annotation
geometric
IL_8P9A_311
IL_14684.1
IL_8VVQ_1141/WA/3702:3705,
1/WA/3751:3752		Minor groove platform, major groove intercalation
geometric
IL_8CRE_089
NA
IL_8VVQ_1151/WA/3706:3707,
1/WA/3747:3750		Multiple bulged bases
geometric
IL_3MXH_004
IL_71421.2
IL_8VVQ_1161/WA/3710:3712,
1/WA/3743:3744		Single stack bend
geometric
IL_7A0S_054
IL_15011.2
IL_8VVQ_1171/WA/3712:3716,
1/WA/3741:3743		No text annotation
geometric
IL_8CRE_092
NA
IL_8VVQ_1181/WA/3717:3723,
1/WA/3734:3740		No text annotation
geometric
IL_8P9A_316
IL_65359.1
IL_8VVQ_1191/WA/3782:3783,
1/WA/3813:3816		No text annotation
geometric
IL_8CRE_094
NA
IL_8VVQ_1201/WA/3783:3794,
1/WA/3810:3813		No text annotation
geometric
IL_8CRE_095
NA
IL_8VVQ_1211/WA/3897:3900,
1/WA/4565:4567		No text annotation
geometric
IL_8P9A_319
IL_75527.2
IL_8VVQ_1221/WA/3902:3904,
1/WA/4560:4563		No text annotation
geometric
IL_8CRE_097
NA
IL_8VVQ_1231/WA/3915:3917,
1/WA/4390:4391		No text annotation
geometric
IL_8CRE_098
NA
IL_8VVQ_1241/WA/3918:3919,
1/WA/4386:4389		Minor groove platform
geometric
IL_8P9A_322
IL_34520.3
IL_8VVQ_1251/WA/3929:3931,
1/WA/4183:4186		Isolated tHS basepair with bulges
geometric
IL_5J7L_325
NA
IL_8VVQ_1261/WA/4084:4090,
1/WA/4163:4166		No text annotation
geometric
IL_8CRE_106
NA
IL_8VVQ_1271/WA/4097:4099,
1/WA/4114:4115		Single stack bend
geometric
IL_7A0S_054
IL_15011.2
IL_8VVQ_1281/WA/4193:4194,
1/WA/4204:4206		Single bulged A
geometric
IL_8P9A_325
IL_14190.2
IL_8VVQ_1291/WA/4245:4247,
1/WA/4265:4269		No text annotation
geometric
IL_8P9A_326
IL_14250.1
IL_8VVQ_1301/WA/4293:4295,
1/WA/4319:4320		Single bulged A
geometric
IL_7MKY_001
IL_14190.2
IL_8VVQ_1311/WA/4297:4300,
1/WA/4314:4317		Tandem non-canonical cWW pairs
geometric
IL_8CRE_440
IL_15225.2
IL_8VVQ_1321/WA/4349:4352,
1/WA/4366:4367		Single stack bend
geometric
IL_8P9A_328
IL_15011.2
IL_8VVQ_1331/WA/4402:4403,
1/WA/4444:4446		Major groove platform
geometric
IL_8P9A_329
IL_48076.8
IL_8VVQ_1341/WA/4403:4405,
1/WA/4442:4444		Isolated non-canonical cWW pair
geometric
IL_8P9A_330
IL_01003.3
IL_8VVQ_1351/WA/4405:4407,
1/WA/4441:4442		No text annotation
geometric
IL_8P9A_331
IL_46637.2
IL_8VVQ_1361/WA/4407:4409,
1/WA/4437:4441		No text annotation
geometric
IL_8CRE_113
NA
IL_8VVQ_1371/WA/4414:4418,
1/WA/4428:4432		Double sheared with non-canonical cWW
geometric
IL_8CRE_114
NA
IL_8VVQ_1381/WA/4455:4456,
1/WA/4528:4530		No text annotation
geometric
IL_8P9A_334
IL_46637.2
IL_8VVQ_1391/WA/4458:4460,
1/WA/4522:4526		Isolated non-canonical cWW with bulges
geometric
IL_8CRE_116
NA
IL_8VVQ_1401/WA/4460:4461,
1/WA/4519:4522		No text annotation
geometric
IL_8P9A_336
IL_44609.2
IL_8VVQ_1411/WA/4468:4470,
1/WA/4491:4493		Isolated non-canonical cWW pair
geometric
IL_8P9A_337
IL_01003.3
IL_8VVQ_1421/WA/4468:4472,
1/WA/4487:4493		No text annotation
IL_8VVQ_1431/WA/4470:4472,
1/WA/4487:4491		No text annotation
geometric
IL_3DD2_004
IL_09353.1
IL_8VVQ_1441/WA/4497:4499,
1/WA/4505:4507		Isolated non-canonical cWW pair
geometric
IL_8P9A_340
IL_01003.3
IL_8VVQ_1451/WA/4539:4540,
1/WA/4549:4551		Single bulged A
geometric
IL_1U9S_001
IL_14190.2
IL_8VVQ_1461/WA/4582:4584,
1/WA/4723:4725		Isolated cWH basepair
geometric
IL_4E5C_001
IL_10892.2
IL_8VVQ_1471/WA/4584:4587,
1/WA/4719:4723		Double sheared
geometric
IL_8P9A_342
IL_58355.2
IL_8VVQ_1481/WA/4592:4594,
1/WA/4620:4622		Isolated non-canonical cWW pair
geometric
IL_5ZTM_002
IL_71625.3
IL_8VVQ_1491/WA/4598:4605,
1/WA/4610:4616		8x7 Sarcin-Ricin; G-bulge
geometric
IL_8CRE_125
NA
IL_8VVQ_1501/WA/4626:4631,
1/WA/4671:4675		No text annotation
IL_8VVQ_1511/WA/4634:4639,
1/WA/4664:4668		UAA/GAN variation
geometric
IL_4V9F_094
IL_45790.2
IL_8VVQ_1521/WA/4640:4642,
1/WA/4661:4663		Isolated cWH basepair
geometric
IL_3R1C_012
IL_10892.2
IL_8VVQ_1531/WA/4643:4644,
1/WA/4657:4660		Multiple bulged bases
geometric
IL_5J7L_349
NA
IL_8VVQ_1541/WA/4682:4687,
1/WA/4707:4712		UAA/GAN with extra cWW
geometric
IL_5J7L_350
NA
IL_8VVQ_1551/WA/4740:4748,
1/WA/4956:4963		No text annotation
IL_8VVQ_1561/WA/4751:4753,
1/WA/4950:4953		No text annotation
IL_8VVQ_1571/WA/4758:4767,
1/WA/4871:4879		No text annotation
IL_8VVQ_1581/WA/4771:4773,
1/WA/4865:4867		Isolated non-canonical cWW pair
geometric
IL_5J7L_326
NA
IL_8VVQ_1601/WA/4887:4890,
1/WA/4933:4936		Tandem non-canonical cWW pairs
geometric
IL_4XW0_002
IL_71194.2
IL_8VVQ_1611/WA/4893:4899,
1/WA/4926:4930		No text annotation
IL_8VVQ_1631/WA/4974:4977,
1/WA/4985:4988		Tandem non-canonical cWW pairs
geometric
IL_8CRE_135
NA
IL_8VVQ_1641/WA/4998:4999,
1/WA/5055:5057		Single bulged C
geometric
IL_1KUQ_002
IL_05642.2
IL_8VVQ_1651/WA/5002:5004,
1/WA/5047:5052		No text annotation
geometric
IL_8P9A_359
IL_00086.1
IL_8VVQ_1661/WA/5005:5011,
1/WA/5041:5046		No text annotation
IL_8VVQ_1671/WA/5014:5016,
1/WA/5037:5038		Single bulged C
geometric
IL_6XKO_001
IL_05642.2
IL_8VVQ_1681/WA/5016:5019,
1/WA/5034:5037		Double sheared
geometric
IL_8CRE_141
NA
IL_8VVQ_1691/XA/15:16,
1/XA/62:64		Single bulged C
geometric
IL_3W3S_001
IL_05642.2
IL_8VVQ_1701/XA/21:27,
1/XA/52:57		No text annotation
geometric
IL_8OI5_135
IL_41504.1
IL_8VVQ_1711/XA/28:29,
1/XA/48:51		No text annotation
geometric
IL_9DFE_112
IL_73108.2
IL_8VVQ_1721/XA/32:36,
1/XA/41:45		No text annotation
geometric
IL_9DFE_113
IL_58103.12
IL_8VVQ_1731/XA/71:78,
1/XA/98:104		8x7 Sarcin-Ricin; G-bulge
geometric
IL_7A0S_007
IL_62167.3
IL_8VVQ_1741/XA/79:81,
1/XA/95:97		Isolated non-canonical cWW pair
geometric
IL_8CRE_473
IL_71625.3
IL_8VVQ_1751/XA/82:85,
1/XA/92:94		Isolated non-canonical cWW pair
geometric
IL_8OI5_140
IL_01003.3
IL_8VVQ_1761/YA/64:66,
1/YA/92:95		Isolated non-canonical cWW with bulges
geometric
IL_7ELQ_002
NA
IL_8VVQ_1771/ZA/23:25,
1/ZA/649:651		Isolated non-canonical cWW pair
geometric
IL_8CRE_425
IL_01003.3
IL_8VVQ_1781/ZA/34:36,
1/ZA/519:521		Isolated non-canonical cWW pair
geometric
IL_6IA2_002
IL_01003.3
IL_8VVQ_1791/ZA/37:40,
1/ZA/514:518		Double sheared
geometric
IL_4WF9_016
IL_58355.2
IL_8VVQ_1801/ZA/41:47,
1/ZA/479:481		No text annotation
geometric
IL_8CRE_393
IL_88082.2
IL_8VVQ_1811/ZA/49:51,
1/ZA/476:477		Minor groove platform
geometric
IL_8CRE_394
IL_34520.3
IL_8VVQ_1821/ZA/57:62,
1/ZA/86:88		No text annotation
geometric
IL_8P9A_378
IL_61299.6
IL_8VVQ_1831/ZA/63:68,
1/ZA/81:85		No text annotation
geometric
IL_8P9A_379
IL_21667.2
IL_8VVQ_1841/ZA/108:110,
1/ZA/351:353		Isolated non-canonical cWW pair
geometric
IL_8FEQ_001
IL_71625.3
IL_8VVQ_1851/ZA/110:112,
1/ZA/349:351		Isolated non-canonical cWW pair
geometric
IL_4WF9_042
IL_01003.3
IL_8VVQ_1861/ZA/112:115,
1/ZA/348:349		Multiple bulged bases
geometric
IL_8P9A_381
IL_71421.2
IL_8VVQ_1871/ZA/116:121,
1/ZA/343:347		No text annotation
geometric
IL_8CRE_399
IL_31545.1
IL_8VVQ_1881/ZA/145:151,
1/ZA/167:174		No text annotation
geometric
IL_8CRE_400
IL_24485.1
IL_8VVQ_1891/ZA/152:154,
1/ZA/164:166		Isolated cWH basepair
geometric
IL_6RA4_002
IL_10892.2
IL_8VVQ_1901/ZA/188:192,
1/ZA/207:211		Double sheared with non-canonical cWW
geometric
IL_5J7L_274
NA
IL_8VVQ_1911/ZA/216:219,
1/ZA/302:309		No text annotation
IL_8VVQ_1921/ZA/312:314,
1/ZA/336:337		Single bulged A
geometric
IL_8P9A_388
IL_14190.2
IL_8VVQ_1931/ZA/317:319,
1/ZA/332:333		Single stack bend
geometric
IL_8P9A_238
IL_15011.2
IL_8VVQ_1941/ZA/320:323,
1/ZA/327:331		No text annotation
geometric
IL_7WIE_001
IL_59580.1
IL_8VVQ_1951/ZA/359:364,
1/ZA/396:403		Kink-turn with non-sequential stacking
geometric
IL_8CRE_408
IL_46174.4
IL_8VVQ_1961/ZA/366:371,
1/ZA/393:394		No text annotation
geometric
IL_8P9A_392
IL_01372.1
IL_8VVQ_1971/ZA/411:413,
1/ZA/424:429		No text annotation
geometric
IL_8CRE_410
IL_93336.1
IL_8VVQ_1981/ZA/437:439,
1/ZA/454:456		Isolated cWH basepair
geometric
IL_8CRE_411
IL_10892.2
IL_8VVQ_1991/ZA/459:461,
1/ZA/468:470		No text annotation
geometric
IL_8CRE_412
IL_42997.5
IL_8VVQ_2001/ZA/487:489,
1/ZA/511:512		Single bulged U
geometric
IL_4LFB_014
IL_97561.3
IL_8VVQ_2011/ZA/491:495,
1/ZA/508:509		C-loop
geometric
IL_8CRE_414
IL_26900.1
IL_8VVQ_2021/ZA/495:496,
1/ZA/506:508		No text annotation
geometric
IL_8CRE_415
IL_28408.2
IL_8VVQ_2031/ZA/529:530,
1/ZA/554:556		Single bulged A
geometric
IL_4WF9_006
IL_14190.2
IL_8VVQ_2051/ZA/563:565,
1/ZA/585:592		No text annotation
geometric
IL_8CRE_418
IL_02511.1
IL_8VVQ_2061/ZA/566:569,
1/ZA/581:584		tSH-tHW
geometric
IL_5UNE_005
IL_76776.1
IL_8VVQ_2071/ZA/599:608,
1/ZA/635:637		No text annotation
IL_8VVQ_2081/ZA/611:617,
1/ZA/624:632		No text annotation
geometric
IL_8CRE_423
IL_52042.1
IL_8VVQ_2091/ZA/663:665,
1/ZA/1162:1164		Isolated non-canonical cWW pair
geometric
IL_1Y27_001
IL_01003.3
IL_8VVQ_2101/ZA/665:671,
1/ZA/1161:1162		No text annotation
geometric
IL_8CRE_424
IL_20847.1
IL_8VVQ_2111/ZA/673:675,
1/ZA/1030:1032		Isolated non-canonical cWW pair
geometric
IL_8CRE_425
IL_01003.3
IL_8VVQ_2121/ZA/676:680,
1/ZA/1025:1029		tSH-tHW-tHS
geometric
IL_8CRE_426
IL_05821.1
IL_8VVQ_2151/ZA/802:803,
1/ZA/860:863		No text annotation
geometric
IL_8P9A_412
IL_73108.2
IL_8VVQ_2161/ZA/805:807,
1/ZA/856:858		Isolated non-canonical cWW pair
geometric
IL_1ZH5_001
IL_01003.3
IL_8VVQ_2171/ZA/807:815,
1/ZA/849:856		No text annotation
IL_8VVQ_2181/ZA/874:876,
1/ZA/910:912		Isolated non-canonical cWW pair
geometric
IL_6OL3_002
IL_01003.3
IL_8VVQ_2191/ZA/877:879,
1/ZA/907:909		Isolated non-canonical cWW pair
geometric
IL_4LFB_059
IL_01003.3
IL_8VVQ_2201/ZA/925:926,
1/ZA/1015:1017		Single bulged U
geometric
IL_6UFH_004
IL_97561.3
IL_8VVQ_2211/ZA/928:931,
1/ZA/1010:1013		Tandem non-canonical cWW pairs
geometric
IL_8CRE_433
IL_15225.2
IL_8VVQ_2221/ZA/931:935,
1/ZA/1007:1010		Tandem non-canonical cWW pairs
geometric
IL_8CRE_434
IL_15225.2
IL_8VVQ_2231/ZA/942:945,
1/ZA/981:984		Tandem non-canonical cWW pairs
geometric
IL_8P9A_421
IL_15225.2
IL_8VVQ_2241/ZA/952:956,
1/ZA/967:974		Kink-turn
geometric
IL_6UFM_001
IL_71972.1
IL_8VVQ_2251/ZA/1042:1047,
1/ZA/1071:1073		No text annotation
geometric
IL_8CRE_437
IL_31359.1
IL_8VVQ_2261/ZA/1047:1051,
1/ZA/1067:1071		tSH-tHW-tHS
geometric
IL_8CRE_438
IL_05821.1
IL_8VVQ_2271/ZA/1091:1093,
1/ZA/1152:1158		No text annotation
geometric
IL_8CRE_439
IL_82706.2
IL_8VVQ_2281/ZA/1098:1101,
1/ZA/1131:1134		Tandem non-canonical cWW pairs
geometric
IL_8CRE_440
IL_15225.2
IL_8VVQ_2291/ZA/1101:1103,
1/ZA/1129:1131		Isolated cWH basepair
geometric
IL_406D_004
NA
IL_8VVQ_2301/ZA/1108:1110,
1/ZA/1123:1124		Minor groove platform
geometric
IL_8P9A_401
IL_34520.3
IL_8VVQ_2311/ZA/1168:1175,
1/ZA/1186:1191		8x6 Sarcin-Ricin with inserted Y; G-bulge
geometric
IL_8CRE_442
IL_84044.1
IL_8VVQ_2321/ZA/1203:1204,
1/ZA/1694:1696		Single bulged A
geometric
IL_8CRE_443
IL_14190.2
IL_8VVQ_2331/ZA/1206:1208,
1/ZA/1691:1692		Single bulged G
geometric
IL_5J7L_040
NA
IL_8VVQ_2341/ZA/1214:1217,
1/ZA/1681:1685		C-loop
geometric
IL_8CRE_445
IL_63596.12
IL_8VVQ_2351/ZA/1230:1232,
1/ZA/1526:1528		Isolated non-canonical cWW pair
geometric
IL_8P9A_432
IL_01003.3
IL_8VVQ_2361/ZA/1235:1236,
1/ZA/1521:1523		Minor groove platform
geometric
IL_8CRE_447
IL_34520.3
IL_8VVQ_2371/ZA/1270:1273,
1/ZA/1510:1512		No text annotation
geometric
IL_4N0T_004
IL_32983.2
IL_8VVQ_2381/ZA/1281:1290,
1/ZA/1309:1316		No text annotation
IL_8VVQ_2391/ZA/1290:1293,
1/ZA/1306:1309		No text annotation
IL_8VVQ_2401/ZA/1325:1327,
1/ZA/1502:1503		No text annotation
geometric
IL_8CRE_451
IL_97561.3
IL_8VVQ_2411/ZA/1329:1333,
1/ZA/1498:1500		No text annotation
geometric
IL_8CRE_452
IL_82453.1
IL_8VVQ_2421/ZA/1329:1335,
1/ZA/1492:1500		No text annotation
geometric
IL_8P9A_439
IL_99893.1
IL_8VVQ_2431/ZA/1333:1335,
1/ZA/1492:1498		No text annotation
geometric
IL_8P9A_440
IL_34117.1
IL_8VVQ_2441/ZA/1337:1338,
1/ZA/1488:1490		Single bulged A
geometric
IL_8CRE_455
IL_14190.2
IL_8VVQ_2451/ZA/1347:1349,
1/ZA/1380:1382		Isolated cWH basepair
geometric
IL_8P9A_442
IL_10892.2
IL_8VVQ_2461/ZA/1363:1365,
1/ZA/1374:1375		Minor groove platform
geometric
IL_8CRE_457
IL_34520.3
IL_8VVQ_2471/ZA/1402:1405,
1/ZA/1441:1444		No text annotation
geometric
IL_8CRE_481
IL_78800.2
IL_8VVQ_2481/ZA/1408:1409,
1/ZA/1432:1438		No text annotation
IL_8VVQ_2491/ZA/1412:1413,
1/ZA/1427:1429		Single bulged G
geometric
IL_5J7L_019
NA
IL_8VVQ_2501/ZA/1416:1417,
1/ZA/1422:1424		Single bulged C
geometric
IL_3SN2_002
IL_05642.2
IL_8VVQ_2511/ZA/1537:1539,
1/ZA/1594:1596		Isolated non-canonical cWW pair
geometric
IL_3SZX_002
IL_01003.3
IL_8VVQ_2521/ZA/1541:1550,
1/ZA/1582:1592		No text annotation
IL_8VVQ_2531/ZA/1550:1558,
1/ZA/1577:1582		No text annotation
IL_8VVQ_2541/ZA/1560:1562,
1/ZA/1573:1575		Isolated non-canonical cWW pair
geometric
IL_8CRE_473
IL_71625.3
IL_8VVQ_2551/ZA/1604:1610,
1/ZA/1629:1635		No text annotation
IL_8VVQ_2561/ZA/1700:1702,
1/ZA/1833:1836		No text annotation
geometric
IL_4LFB_056
IL_18228.1
IL_8VVQ_2571/ZA/1702:1705,
1/ZA/1829:1833		No text annotation
geometric
IL_8P9A_453
IL_25873.2
IL_8VVQ_2581/ZA/1706:1708,
1/ZA/1826:1828		Isolated non-canonical cWW pair
geometric
IL_8CRE_468
IL_01003.3
IL_8VVQ_2591/ZA/1708:1711,
1/ZA/1822:1826		Tandem non-canonical cWW pairs
geometric
IL_7VYX_002
IL_15225.2
IL_8VVQ_2601/ZA/1714:1716,
1/ZA/1817:1819		Isolated non-canonical cWW pair
geometric
IL_8CRE_470
IL_01003.3
IL_8VVQ_2611/ZA/1717:1720,
1/ZA/1813:1816		Double sheared
geometric
IL_8CRE_471
IL_58355.2
IL_8VVQ_2621/ZA/1720:1722,
1/ZA/1812:1813		No text annotation
geometric
IL_8CRE_472
IL_97561.3
IL_8VVQ_2631/ZA/1729:1731,
1/ZA/1803:1805		Isolated non-canonical cWW pair
geometric
IL_8CRE_473
IL_71625.3
IL_8VVQ_2641/ZA/1733:1736,
1/ZA/1798:1801		Double sheared
geometric
IL_8CRE_474
IL_58355.2
IL_8VVQ_2651/ZA/1739:1741,
1/ZA/1793:1795		Isolated non-canonical cWW pair
geometric
IL_4E48_002
IL_01003.3
IL_8VVQ_2661/ZA/1742:1746,
1/ZA/1788:1792		Triple sheared
geometric
IL_9DFE_075
IL_15190.2
IL_8VVQ_2671/ZA/1750:1751,
1/ZA/1782:1784		No text annotation

Problematic loops

#loop idProblemSequence
IL_8VVQ_073No text annotation
IL_8VVQ_159Single stack bend
IL_8VVQ_162No text annotation
IL_8VVQ_204Isolated non-canonical cWW pair
IL_8VVQ_213Tandem non-canonical cWW pairs
IL_8VVQ_214No text annotation
IL_8VVQ_268Single stack bend

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_8VVQ_0011/WA/112:116,
1/WA/155:160,
1/WA/275:278		No text annotation
J3_8VVQ_0021/WA/196:199,
1/WA/215:228,
1/WA/240:244		No text annotation
J3_8VVQ_0031/WA/351:367,
1/WA/374:379,
1/YA/21:24		No text annotation
geometric
J3_8P9A_045
J3_07616.1
J3_8VVQ_0041/WA/380:387,
1/WA/414:415,
1/YA/19:20		No text annotation
geometric
J3_8P9A_046
J3_68715.1
J3_8VVQ_0051/WA/380:390,
1/WA/401:415,
1/YA/19:20		No text annotation
geometric
J3_8CRE_006
NA
J3_8VVQ_0061/WA/451:455,
1/WA/702:706,
1/WA/1294:1298		No text annotation
J3_8VVQ_0071/WA/1533:1539,
1/WA/1624:1626,
1/WA/1642:1645		No text annotation
geometric
J3_8P9A_049
J3_46658.1
J3_8VVQ_0081/WA/1547:1550,
1/WA/1582:1586,
1/WA/1611:1616		No text annotation
geometric
J3_8P9A_050
J3_21998.1
J3_8VVQ_0091/WA/1728:1729,
1/WA/1804:1808,
1/WA/1834:1839		No text annotation
J3_8VVQ_0101/WA/1971:1974,
1/WA/1996:2003,
1/WA/2018:2020		No text annotation
J3_8VVQ_0111/WA/2395:2401,
1/WA/2807:2809,
1/WA/2821:2824		No text annotation
geometric
J3_8CRE_013
NA
J3_8VVQ_0121/WA/2404:2407,
1/WA/2787:2793,
1/WA/2802:2804		No text annotation
geometric
J3_8P9A_054
J3_76012.1
J3_8VVQ_0131/WA/2442:2447,
1/WA/2517:2521,
1/WA/2538:2539		No text annotation
geometric
J3_8P9A_055
J3_94309.1
J3_8VVQ_0141/WA/2453:2458,
1/WA/2467:2478,
1/WA/2503:2510		No text annotation
J3_8VVQ_0151/WA/2553:2557,
1/WA/2574:2577,
1/WA/2759:2769		No text annotation
J3_8VVQ_0161/WA/2577:2578,
1/WA/2587:2591,
1/WA/2758:2759		No text annotation
geometric
J3_8P9A_087
J3_05348.1
J3_8VVQ_0171/WA/2600:2604,
1/WA/2739:2740,
1/WA/2744:2749		No text annotation
geometric
J3_8CRE_018
NA
J3_8VVQ_0181/WA/3939:3941,
1/WA/4076:4080,
1/WA/4170:4175		Kink-turn 3-way junction
geometric
J3_5J7L_044
NA
J3_8VVQ_0191/WA/4093:4096,
1/WA/4116:4131,
1/WA/4157:4160		No text annotation
J3_8VVQ_0201/WA/4230:4232,
1/WA/4333:4344,
1/WA/4372:4377		No text annotation
J3_8VVQ_0211/WA/4243:4245,
1/WA/4269:4271,
1/WA/4280:4285		No text annotation
geometric
J3_8P9A_062
J3_05327.1
J3_8VVQ_0221/WA/4465:4468,
1/WA/4493:4495,
1/WA/4509:4515		No text annotation
geometric
J3_8P9A_063
J3_44047.1
J3_8VVQ_0231/WA/4753:4756,
1/WA/4881:4885,
1/WA/4938:4950		No text annotation
J3_8VVQ_0241/WA/4972:4974,
1/WA/4988:4996,
1/WA/5059:5065		No text annotation
J3_8VVQ_0251/XA/9:14,
1/XA/65:66,
1/XA/109:110		No text annotation
geometric
J3_8OI5_025
J3_26985.1
J3_8VVQ_0261/YA/44:45,
1/YA/58:64,
1/YA/95:99		No text annotation
J3_8VVQ_0271/ZA/40:41,
1/ZA/481:487,
1/ZA/512:514		No text annotation
geometric
J3_8CRE_071
J3_58657.1
J3_8VVQ_0281/ZA/40:47,
1/ZA/479:487,
1/ZA/512:514		No text annotation
geometric
J3_8CRE_072
J3_63856.1
J3_8VVQ_0291/ZA/682:685,
1/ZA/917:923,
1/ZA/1019:1023		No text annotation
J3_8VVQ_0301/ZA/816:819,
1/ZA/829:831,
1/ZA/843:848		No text annotation
geometric
J3_8P9A_073
J3_97642.2
J3_8VVQ_0311/ZA/938:941,
1/ZA/985:993,
1/ZA/1000:1004		No text annotation
geometric
J3_8P9A_074
J3_23895.1
J3_8VVQ_0321/ZA/1094:1096,
1/ZA/1136:1140,
1/ZA/1147:1151		No text annotation
J3_8VVQ_0331/ZA/1218:1221,
1/ZA/1645:1651,
1/ZA/1673:1680		No text annotation
geometric
J3_8P9A_076
J3_85722.1
J3_8VVQ_0341/ZA/1225:1228,
1/ZA/1530:1532,
1/ZA/1638:1641		No text annotation
geometric
J3_8CRE_079
J3_44359.1
J3_8VVQ_0351/ZA/1237:1244,
1/ZA/1255:1266,
1/ZA/1516:1520		No text annotation
geometric
J3_8CRE_080
J3_88451.1
J3_8VVQ_0361/ZA/1273:1277,
1/ZA/1320:1324,
1/ZA/1504:1510		No text annotation
J3_8VVQ_0371/ZA/1340:1345,
1/ZA/1384:1389,
1/ZA/1481:1486		No text annotation
J3_8VVQ_0381/ZA/1350:1351,
1/ZA/1360:1363,
1/ZA/1375:1379		No text annotation
geometric
J3_8CRE_083
J3_76043.4
J3_8VVQ_0391/ZA/1391:1399,
1/ZA/1447:1456,
1/ZA/1470:1479		No text annotation
J3_8VVQ_0401/ZA/1532:1536,
1/ZA/1597:1604,
1/ZA/1635:1638		No text annotation
geometric
J3_4LFB_009
J3_03192.1
J4_8VVQ_0011/SA/7:10,
1/SA/25:27,
1/SA/43:49,
1/SA/65:66		No text annotation
J4_8VVQ_0021/TA/7:10,
1/TA/25:27,
1/TA/43:49,
1/TA/65:66		No text annotation
J4_8VVQ_0031/UA/7:10,
1/UA/25:27,
1/UA/43:49,
1/UA/65:66		No text annotation
J4_8VVQ_0041/WA/111:112,
1/WA/278:283,
1/WA/304:310,
1/WA/327:330		No text annotation
J4_8VVQ_0051/WA/196:199,
1/WA/215:222,
1/WA/226:228,
1/WA/240:244		No text annotation
J4_8VVQ_0061/WA/713:714,
1/WA/960:966,
1/WA/976:983,
1/WA/1280:1286		No text annotation
J4_8VVQ_0071/WA/986:990,
1/WA/1076:1080,
1/WA/1242:1247,
1/WA/1270:1277		No text annotation
J4_8VVQ_0081/WA/2367:2373,
1/WA/2391:2393,
1/WA/2826:2831,
1/WA/3858:3859		No text annotation
J4_8VVQ_0091/WA/2408:2412,
1/WA/2436:2441,
1/WA/2540:2541,
1/WA/2779:2786		No text annotation
J4_8VVQ_0101/WA/2620:2621,
1/WA/2639:2644,
1/WA/2694:2700,
1/WA/2720:2721		No text annotation
J4_8VVQ_0111/WA/3636:3640,
1/WA/3652:3656,
1/WA/3692:3696,
1/WA/3823:3828		No text annotation
J4_8VVQ_0121/WA/3698:3700,
1/WA/3754:3755,
1/WA/3773:3782,
1/WA/3816:3821		No text annotation
J4_8VVQ_0131/WA/4233:4237,
1/WA/4291:4293,
1/WA/4320:4321,
1/WA/4330:4332		No text annotation
J4_8VVQ_0141/WA/4589:4592,
1/WA/4622:4623,
1/WA/4678:4680,
1/WA/4714:4717		No text annotation
J4_8VVQ_0151/ZA/98:106,
1/ZA/355:357,
1/ZA/405:409,
1/ZA/431:432		No text annotation
J4_8VVQ_0161/ZA/671:673,
1/ZA/1032:1037,
1/ZA/1078:1089,
1/ZA/1160:1161		No text annotation
J5_8VVQ_0011/WA/19:21,
1/YA/35:42,
1/YA/101:106,
1/YA/113:114,
1/YA/136:138		No text annotation
J5_8VVQ_0021/WA/1337:1342,
1/WA/1518:1521,
1/WA/1660:1663,
1/WA/2290:2292,
1/WA/2347:2353		No text annotation
J5_8VVQ_0031/WA/2857:2865,
1/WA/2889:2890,
1/WA/3615:3616,
1/WA/3620:3628,
1/WA/3837:3839		No text annotation
J5_8VVQ_0041/WA/3905:3912,
1/WA/4394:4402,
1/WA/4446:4455,
1/WA/4530:4536,
1/WA/4554:4559		No text annotation
J5_8VVQ_0051/WA/3922:3925,
1/WA/4190:4193,
1/WA/4206:4207,
1/WA/4229:4230,
1/WA/4377:4383		No text annotation
J5_8VVQ_0061/ZA/30:34,
1/ZA/521:527,
1/ZA/558:563,
1/ZA/592:595,
1/ZA/641:644		No text annotation
J5_8VVQ_0071/ZA/30:34,
1/ZA/521:527,
1/ZA/558:565,
1/ZA/585:595,
1/ZA/641:644		No text annotation
J5_8VVQ_0081/ZA/53:56,
1/ZA/89:96,
1/ZA/434:436,
1/ZA/457:459,
1/ZA/470:474		No text annotation
J6_8VVQ_0011/WA/21:26,
1/WA/57:67,
1/WA/74:78,
1/WA/105:109,
1/WA/332:339,
1/YA/33:35		No text annotation
J6_8VVQ_0021/WA/1354:1357,
1/WA/1386:1390,
1/WA/1397:1401,
1/WA/1420:1423,
1/WA/1466:1468,
1/WA/1501:1506		No text annotation
J6_8VVQ_0031/WA/3922:3925,
1/WA/4190:4193,
1/WA/4206:4207,
1/WA/4229:4232,
1/WA/4333:4344,
1/WA/4372:4383		No text annotation
J7_8VVQ_0011/WA/1668:1673,
1/WA/1686:1687,
1/WA/1854:1857,
1/WA/1881:1886,
1/WA/1897:1901,
1/WA/2079:2080,
1/WA/2280:2285		No text annotation

Problematic loops

No problematic loops


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