HL_8VVQ_038
3D structure
- PDB id
- 8VVQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GGAUGAAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8VVQ_038 not in the Motif Atlas
- Geometric match to HL_8P9A_138
- Geometric discrepancy: 0.1753
- The information below is about HL_8P9A_138
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_47171.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
8VVQ|1|WA|G|1888
8VVQ|1|WA|G|1889
8VVQ|1|WA|A|1890
8VVQ|1|WA|U|1891
8VVQ|1|WA|G|1892
8VVQ|1|WA|A|1893
8VVQ|1|WA|A|1894
8VVQ|1|WA|C|1895
Current chains
- Chain WA
- 28S rRNA
Nearby chains
- Chain DA
- L32
- Chain EA
- eL33
- Chain F
- uL30
- Chain XA
- 5S ribosomal RNA; 5S rRNA
Coloring options: