HL_8VVQ_047

3D structure

PDB id

8VVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUUCAGAUCC

Length

10 nucleotides

Bulged bases

8VVQ|1|WA|U|2532, 8VVQ|1|WA|C|2533

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVQ_047 not in the Motif Atlas

Geometric match to HL_8P9A_146

Geometric discrepancy: 0.1046

The information below is about HL_8P9A_146

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77449.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

14

Unit IDs

8VVQ|1|WA|G|2525
8VVQ|1|WA|U|2526
8VVQ|1|WA|U|2527
8VVQ|1|WA|C|2528
8VVQ|1|WA|A|2529
8VVQ|1|WA|G|2530
8VVQ|1|WA|A|2531
8VVQ|1|WA|U|2532
8VVQ|1|WA|C|2533
8VVQ|1|WA|C|2534

Current chains

Chain WA

28S rRNA

Nearby chains

Chain FA

L34

Chain Q

eL19

Chain W

uL23