HL_8VVQ_048

3D structure

PDB id

8VVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGCGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVQ_048 not in the Motif Atlas

Geometric match to HL_9DFE_045

Geometric discrepancy: 0.1868

The information below is about HL_9DFE_045

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

8VVQ|1|WA|C|2563
8VVQ|1|WA|G|2564
8VVQ|1|WA|C|2565
8VVQ|1|WA|G|2566
8VVQ|1|WA|A|2567
8VVQ|1|WA|G|2568

Current chains

Chain WA

28S rRNA

Nearby chains