HL_8VVQ_064

3D structure

PDB id

8VVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

8VVQ|1|WA|A|3878, 8VVQ|1|WA|A|3879, 8VVQ|1|WA|C|3880

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVQ_064 not in the Motif Atlas

Geometric match to HL_8CRE_049

Geometric discrepancy: 0.0531

The information below is about HL_8CRE_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61996.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

8VVQ|1|WA|G|3875
8VVQ|1|WA|G|3876
8VVQ|1|WA|G|3877
8VVQ|1|WA|A|3878
8VVQ|1|WA|A|3879
8VVQ|1|WA|C|3880
8VVQ|1|WA|G|3881
8VVQ|1|WA|G|3882
8VVQ|1|WA|G|3883
8VVQ|1|WA|C|3884

Current chains

Chain WA

28S rRNA

Nearby chains

Chain B

uL3

Chain DA

L32