HL_8VVQ_078

3D structure

PDB id

8VVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVQ_078 not in the Motif Atlas

Geometric match to HL_8P9A_175

Geometric discrepancy: 0.0582

The information below is about HL_8P9A_175

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

8VVQ|1|WA|C|4542
8VVQ|1|WA|G|4543
8VVQ|1|WA|U|4544
8VVQ|1|WA|G|4545
8VVQ|1|WA|A|4546
8VVQ|1|WA|G|4547

Current chains

Chain WA

28S rRNA

Nearby chains

Chain A

uL2

Chain SA

Transfer RNA; tRNA