HL_8VVQ_081

3D structure

PDB id

8VVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

8VVQ|1|WA|G|4696, 8VVQ|1|WA|C|4700

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVQ_081 not in the Motif Atlas

Geometric match to HL_8CRE_066

Geometric discrepancy: 0.0651

The information below is about HL_8CRE_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

8VVQ|1|WA|C|4690
8VVQ|1|WA|U|4691
8VVQ|1|WA|G|4692
8VVQ|1|WA|A|4693
8VVQ|1|WA|A|4694
8VVQ|1|WA|C|4695
8VVQ|1|WA|G|4696
8VVQ|1|WA|C|4697
8VVQ|1|WA|C|4698
8VVQ|1|WA|U|4699
8VVQ|1|WA|C|4700
8VVQ|1|WA|U|4701
8VVQ|1|WA|A|4702
8VVQ|1|WA|A|4703
8VVQ|1|WA|G|4704

Current chains

Chain WA

28S rRNA

Nearby chains

Chain H

L9

Chain LA

eL40

Chain N

uL13