HL_8VVQ_091

3D structure

PDB id

8VVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CACUUG

Length

6 nucleotides

Bulged bases

8VVQ|1|YA|U|111

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVQ_091 not in the Motif Atlas

Geometric match to HL_8P9A_188

Geometric discrepancy: 0.1493

The information below is about HL_8P9A_188

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13184.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

8VVQ|1|YA|C|107
8VVQ|1|YA|A|108
8VVQ|1|YA|C|109
8VVQ|1|YA|U|110
8VVQ|1|YA|U|111
8VVQ|1|YA|G|112

Current chains

Chain YA

5.8S rRNA

Nearby chains

Chain IA

L37

Chain KA

eL39

Chain W

uL23

Chain WA

Large subunit ribosomal RNA; LSU rRNA