HL_8VVQ_100

3D structure

PDB id

8VVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UCAGGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVQ_100 not in the Motif Atlas

Geometric match to HL_8CRE_199

Geometric discrepancy: 0.0889

The information below is about HL_8CRE_199

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

8VVQ|1|ZA|U|416
8VVQ|1|ZA|C|417
8VVQ|1|ZA|A|418
8VVQ|1|ZA|G|419
8VVQ|1|ZA|G|420
8VVQ|1|ZA|G|421

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain CB

S2-like

Chain JB

S9

Chain LB

S11

Chain WB

S15A

Chain XB

S23