HL_8VVQ_103

3D structure

PDB id

8VVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGACCCG

Length

7 nucleotides

Bulged bases

8VVQ|1|ZA|A|500, 8VVQ|1|ZA|C|502, 8VVQ|1|ZA|C|503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVQ_103 not in the Motif Atlas

Geometric match to HL_8CRE_202

Geometric discrepancy: 0.1369

The information below is about HL_8CRE_202

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.2

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

8VVQ|1|ZA|C|498
8VVQ|1|ZA|G|499
8VVQ|1|ZA|A|500
8VVQ|1|ZA|C|501
8VVQ|1|ZA|C|502
8VVQ|1|ZA|C|503
8VVQ|1|ZA|G|504

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain EB

S4

Chain YB

S24