HL_8VVQ_109
3D structure
- PDB id
- 8VVQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AGGUGAAAUU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8VVQ_109 not in the Motif Atlas
- Geometric match to HL_8P9A_209
- Geometric discrepancy: 0.1445
- The information below is about HL_8P9A_209
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_38491.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 12
Unit IDs
8VVQ|1|ZA|A|957
8VVQ|1|ZA|G|958
8VVQ|1|ZA|G|959
8VVQ|1|ZA|U|960
8VVQ|1|ZA|G|961
8VVQ|1|ZA|A|962
8VVQ|1|ZA|A|963
8VVQ|1|ZA|A|964
8VVQ|1|ZA|U|965
8VVQ|1|ZA|U|966
Current chains
- Chain ZA
- 18S rRNA
Nearby chains
- Chain FB
- S5
- Chain OB
- S14
- Chain TA
- Transfer RNA; tRNA
- Chain VA
- mRNA
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