HL_8VVQ_110

3D structure

PDB id

8VVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVQ_110 not in the Motif Atlas

Geometric match to HL_8CRE_211

Geometric discrepancy: 0.053

The information below is about HL_8CRE_211

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

8VVQ|1|ZA|C|994
8VVQ|1|ZA|G|995
8VVQ|1|ZA|A|996
8VVQ|1|ZA|A|997
8VVQ|1|ZA|A|998
8VVQ|1|ZA|G|999

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain AC

S26

Chain NB

uS15