HL_8VVQ_116

3D structure

PDB id

8VVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

8VVQ|1|ZA|U|1300, 8VVQ|1|ZA|G|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVQ_116 not in the Motif Atlas

Geometric match to HL_8CRE_217

Geometric discrepancy: 0.2546

The information below is about HL_8CRE_217

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_98423.3

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8VVQ|1|ZA|A|1295
8VVQ|1|ZA|U|1296
8VVQ|1|ZA|U|1297
8VVQ|1|ZA|G|1298
8VVQ|1|ZA|A|1299
8VVQ|1|ZA|U|1300
8VVQ|1|ZA|A|1301
8VVQ|1|ZA|G|1302
8VVQ|1|ZA|C|1303
8VVQ|1|ZA|U|1304

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain DC

uS14

Chain FC

S27A

Chain PB

S15