HL_8VVQ_117

3D structure

PDB id

8VVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AGCGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVQ_117 not in the Motif Atlas

Geometric match to HL_4V9F_065

Geometric discrepancy: 0.0636

The information below is about HL_4V9F_065

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

8VVQ|1|ZA|A|1353
8VVQ|1|ZA|G|1354
8VVQ|1|ZA|C|1355
8VVQ|1|ZA|G|1356
8VVQ|1|ZA|A|1357
8VVQ|1|ZA|U|1358

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain AB

RPSA

Chain CB

S2-like