HL_8VVR_057

3D structure

PDB id

8VVR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding/Post-hydrolysis state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUUAAUUAAAA

Length

11 nucleotides

Bulged bases

8VVR|1|WA|A|3644, 8VVR|1|WA|A|3645, 8VVR|1|WA|U|3646, 8VVR|1|WA|A|3650

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVR_057 not in the Motif Atlas

Geometric match to HL_8CRE_044

Geometric discrepancy: 0.1686

The information below is about HL_8CRE_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01962.2

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

8VVR|1|WA|U|3641
8VVR|1|WA|U|3642
8VVR|1|WA|U|3643
8VVR|1|WA|A|3644
8VVR|1|WA|A|3645
8VVR|1|WA|U|3646
8VVR|1|WA|U|3647
8VVR|1|WA|A|3648
8VVR|1|WA|A|3649
8VVR|1|WA|A|3650
8VVR|1|WA|A|3651

Current chains

Chain WA

28S rRNA

Nearby chains

Chain A

uL2

Chain IA

L37