HL_8VVS_006

3D structure

PDB id

8VVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUCAAGUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVS_006 not in the Motif Atlas

Geometric match to HL_8SP9_004

Geometric discrepancy: 0.1925

The information below is about HL_8SP9_004

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.3

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

8VVS|1|TA|G|53
8VVS|1|TA|U|54
8VVS|1|TA|U|55
8VVS|1|TA|C|56
8VVS|1|TA|A|57
8VVS|1|TA|A|58
8VVS|1|TA|G|59
8VVS|1|TA|U|60
8VVS|1|TA|C|61

Current chains

Chain TA

E-site tRNA

Nearby chains