HL_8VVS_014

3D structure

PDB id

8VVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCUGAUCG

Length

8 nucleotides

Bulged bases

8VVS|1|WA|C|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVS_014 not in the Motif Atlas

Geometric match to HL_3VJR_001

Geometric discrepancy: 0.2967

The information below is about HL_3VJR_001

Detailed Annotation

T-loop with 2 bulged bases not stacked

Broad Annotation

T-loop with 2 bulged bases not stacked

Motif group

HL_13999.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

8VVS|1|WA|U|204
8VVS|1|WA|C|205
8VVS|1|WA|U|206
8VVS|1|WA|G|207
8VVS|1|WA|A|208
8VVS|1|WA|U|209
8VVS|1|WA|C|210
8VVS|1|WA|G|211

Current chains

Chain WA

28S rRNA

Nearby chains

Chain DA

L32

Chain X

L26