HL_8VVS_030

3D structure

PDB id

8VVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

ACGUGCGAAU

Length

10 nucleotides

Bulged bases

8VVS|1|WA|U|1598, 8VVS|1|WA|A|1602, 8VVS|1|WA|A|1603

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVS_030 not in the Motif Atlas

Geometric match to HL_8CRE_019

Geometric discrepancy: 0.0887

The information below is about HL_8CRE_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_88205.2

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

8VVS|1|WA|A|1595
8VVS|1|WA|C|1596
8VVS|1|WA|G|1597
8VVS|1|WA|U|1598
8VVS|1|WA|G|1599
8VVS|1|WA|C|1600
8VVS|1|WA|G|1601
8VVS|1|WA|A|1602
8VVS|1|WA|A|1603
8VVS|1|WA|U|1604

Current chains

Chain WA

28S rRNA

Nearby chains

Chain B

uL3

Chain IA

L37

Chain O

uL22