HL_8VVS_031

3D structure

PDB id

8VVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

8VVS|1|WA|A|1632, 8VVS|1|WA|G|1635

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVS_031 not in the Motif Atlas

Geometric match to HL_8P9A_133

Geometric discrepancy: 0.1038

The information below is about HL_8P9A_133

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_92598.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

8VVS|1|WA|G|1629
8VVS|1|WA|C|1630
8VVS|1|WA|G|1631
8VVS|1|WA|A|1632
8VVS|1|WA|A|1633
8VVS|1|WA|A|1634
8VVS|1|WA|G|1635
8VVS|1|WA|A|1636
8VVS|1|WA|C|1637

Current chains

Chain WA

28S rRNA

Nearby chains

Chain A

uL2

Chain IA

L37

Chain M

eL15