HL_8VVS_032

3D structure

PDB id

8VVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

8VVS|1|WA|C|1678, 8VVS|1|WA|A|1681

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVS_032 not in the Motif Atlas

Homologous match to HL_9H3G_028

Geometric discrepancy: 0.2293

The information below is about HL_9H3G_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27530.4

Basepair signature

cWW-F-F

Number of instances in this motif group

12

Unit IDs

8VVS|1|WA|C|1677
8VVS|1|WA|C|1678
8VVS|1|WA|U|1679
8VVS|1|WA|C|1680
8VVS|1|WA|A|1681
8VVS|1|WA|G|1682

Current chains

Chain WA

28S rRNA

Nearby chains

Chain AA

L29

Chain NA

eL42

Chain Z

uL15