HL_8VVS_040

3D structure

PDB id

8VVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGCGGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVS_040 not in the Motif Atlas

Geometric match to HL_8CRE_029

Geometric discrepancy: 0.1394

The information below is about HL_8CRE_029

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8VVS|1|WA|C|2319
8VVS|1|WA|G|2320
8VVS|1|WA|C|2321
8VVS|1|WA|G|2322
8VVS|1|WA|G|2323
8VVS|1|WA|G|2324

Current chains

Chain WA

28S rRNA

Nearby chains

Chain DA

L32

Chain PA

L28