HL_8VVS_044

3D structure

PDB id

8VVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCCUC

Length

5 nucleotides

Bulged bases

8VVS|1|WA|C|2490, 8VVS|1|WA|U|2492

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVS_044 not in the Motif Atlas

Geometric match to HL_8CRE_021

Geometric discrepancy: 0.3052

The information below is about HL_8CRE_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70782.2

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8VVS|1|WA|G|2489
8VVS|1|WA|C|2490
8VVS|1|WA|C|2491
8VVS|1|WA|U|2492
8VVS|1|WA|C|2493

Current chains

Chain WA

28S rRNA

Nearby chains

Chain YA

5.8S ribosomal RNA; 5.8S rRNA